Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2553 ATGACATTATTCACCAAAACTGTTGAATCAGAATGCTTTCTTCTGCCCCAAAGAATGCCTCGGAGAGTACTTCAAGTGACTGCACAGGAACCTCCTTCATCCTCTGTGGCTTCGAAAGCCCCCACTTCACGCTACGACCCTGGAATGTTCTTCTTCCTTGGGGGGACTGTGTTGCTCATCATATTGCTCATTCTTCTGTTTATATTTTGGAGGCGTACTAAAGGGCCAGCAAAGGTGAACACAACTCTAACATGTCAGCAAAATGGGAAATATACTGAACCGTATGAGGTGATGAAGATGATGGTCCCAAATATCCAACCAGGACAGATGGAGTTCATTAGTGGAAACCTTCGGACAATCAGCTACTTTGACTTCCGGACATTGAGGAGAGCCACTAAGAATTTCCACCCTCGAAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGGCTTGTTGCAGTAAAGACATTGTCTCTTGACAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGACCTCAAAAGATACTCGTGTACGAATATATGAAGAACAGAAGTTTGGACCTCATAATTTATGGAGGGAGTGATCAATTTCTGAATTGGAACACTAGATTCCAAATTATTCTTGGTGTAGCTCGGGGATTGCAATACCTCCATGAGGATTCGCATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGACGAGAAGTTTCAGCCTAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACTCAGTTTGCAGGAACATTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAGTTGTCCGAAAAGGCAGACATCTATAGTTTCGGAGTTCTTGTGCTAGAAATTATCTGTTGCAGGAAAAACACTGACCTTACTTTACCATCAGAAATGCAGTACCTTCCTGAATATGCATGGAAACTTTACGAGAAGTCAATGTTGATGGAAATAGTGGATCCAAGACTGCGAGAAGATGGGATGGAGGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACATGCGGATTTGAGACCTGCGATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTGCCAAGCCGGTGAGGCCAACCTTCGTTCACAGGAGGCGCGTAATGGATGATGAGAACCACTCTTGGGGAGCCATATCCTCCTCCGAACCTTCCACAACTGCACTGGCATCATTGTAA 1356 0.4447 MTLFTKTVESECFLLPQRMPRRVLQVTAQEPPSSSVASKAPTSRYDPGMFFFLGGTVLLIILLILLFIFWRRTKGPAKVNTTLTCQQNGKYTEPYEVMKMMVPNIQPGQMEFISGNLRTISYFDFRTLRRATKNFHPRNLLGSGGFGPVYQGKLADGRLVAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQKILVYEYMKNRSLDLIIYGGSDQFLNWNTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIICCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPRLREDGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVAKPVRPTFVHRRRVMDDENHSWGAISSSEPSTTALASL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2553 451 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Vra7g2553 451 CDD STKc_IRAK 141 407 - -
Vra7g2553 451 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 114 423 - -
Vra7g2553 451 ProSiteProfiles Protein kinase domain profile. 135 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2553 451 PANTHER RECEPTOR-LIKE KINASE 114 423 - -
Vra7g2553 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vra7g2553 451 Pfam Protein tyrosine and serine/threonine kinase 139 405 IPR001245 GO:0004672|GO:0006468
Vra7g2553 451 Gene3D Transferase(Phosphotransferase) domain 1 212 416 - -
Vra7g2553 451 SMART serkin_6 135 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2553 451 Gene3D Phosphorylase Kinase; domain 1 108 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2553 Vra-Chr7 45869323 45872450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2553 123 422 Receptor kinase-like Gene Family AT1G56120 48.667 3.90e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra7g2553 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2553 - - ccaj:109792436 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2553 7 45869323 45872450 Vra5g0315 5 3018507 3022113 PCT