Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2551 ATGGAAGACGCTGAAGAATGCATCACTGGGCTGTGTTTGGGACTAGGAATGGGAGGGTATGTTCCAAAAAAAGGTAAGCAGAAAGAGAACAGACCCCTGGTAGACTTAGCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACTGATTCTGATAACAGCAACAACAACAACGGATGCAGAAAAAAACTAAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTGCATACCACTCTTAATCCGGTACAAAAACAAGCACTGGCTGATCAACTGAATTTAAAGACAAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGAGCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAGAAGATTGAAGAAGGAATTACAGGAACTACGTGCACTTAAGGTTGGACCATCGCCTCTGTGCATTCAACTATCTAAAACGGCAACTCTGACTACGTGCTCTTCGTGCGAGAAACTAGTAAAACTGGATGAAGGAAAGAACAATACAGAGTTAAAGGGTAGAAATTGA 603 0.4229 MEDAEECITGLCLGLGMGGYVPKKGKQKENRPLVDLAFELCPKGEAINLNHDKVESTDSDNSNNNNGCRKKLRLSKDQSSMLENSFKLHTTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVEREWLKKQCQNLSDENRRLKKELQELRALKVGPSPLCIQLSKTATLTTCSSCEKLVKLDEGKNNTELKGRN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2551 200 SUPERFAMILY Homeodomain-like 54 126 IPR009057 -
Vra7g2551 200 Gene3D - 73 123 - -
Vra7g2551 200 SMART halz 125 168 IPR003106 GO:0006355|GO:0043565
Vra7g2551 200 SMART HOX_1 67 129 IPR001356 GO:0003677
Vra7g2551 200 PANTHER - 54 189 - -
Vra7g2551 200 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Vra7g2551 200 Pfam Homeodomain 69 123 IPR001356 GO:0003677
Vra7g2551 200 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Vra7g2551 200 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 54 189 - -
Vra7g2551 200 Coils Coil 117 158 - -
Vra7g2551 200 CDD homeodomain 69 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2551 Vra-Chr7 45849746 45851136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2551 56 183 Homeobox Transcription Factor Family AT3G60390 64.341 1.83e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vra7g2551 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2551 K09338 - gmx:100812222 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2551 7 45849746 45851136 Vra5g0316 5 3031953 3033710 PCT