Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2548 ATGGGGAACTGTTGGAGTTTTCAATCAGCTTCTGCTGTCGATCACCGCAACTCCATTACTGCCCCCAACCTCAACAATCAATCAGGGAGTATTCAGTTTTCTGCTGGTACAAGCAACAATAGATTAATACAGAGCAGTAATTCTACTTCTCTCGGGCAGAGCAGCCACTCCGGAGGATTCAGCAGGTTCTTTGGACCAAGTAGTAGTAATAATTACTCAACAGAACTGAAAGCAGCCACCAAAAATTTCAGAGCAGAGACTCTGGTAGGAGAGGGGGGATTTGGTAAAGTATACAAGGGTTTGATTAGAGGTGAGGGGTTGGCTATTGCCATCAAGAAGTTGAATTCCGGAAGCAATCAAGGAGTGTCGGAATGGCAGTCAGAGGTTAATTTCTTAGGGAGGCTTTCTCATCCCAACCTTGTTAAGTTGTTGGGATTTGGGAGGGAGGATAGTGAACTGTTTCTGGTGTATGAATTTATGTCTCGTGGGAGCTTGGATAACCACCTATTTGGAAGAGGTGCAAATGTTCGGCCACTTTCTTGGGACACAAGGCTAACAATTATGATTGGAGCAGCCAGGGGGCTTCATTTCCTTCACAGCTTGGAGAATGCCATTATATATAGGGATTTTAAGCCATCAAATATTCTCCTCGACTCAAAATATACGGCTAAGTTATCAGATTTTGGCTTAGCCAAATCTATCACTTCGCCTGATCAGAGTCACATATCAACACGTATTGTGGGAACACACGGCTATGCTGCTCCTGAGTACATTGCAACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTTTTTTGGTGGAGCTGCTGACTGGCAAGAGGATTAGTGGTATAATGCAACTATGTGGGGAAACGCCGTTGAGGGATTGGGTCAAAAGAAATCTTTTAAATAGAGGGTATATAAGAAACACCATGGATGCAAAGTTGGAAGGGAAGTATCCATCAAACTTAGCTTTACAAACGGCTCAACTAGCTCTCAAATGCATCCAAATAGAGCCCAAAGTAAGGCCATCAATGAAAGAAGTTCTTGAAAGATTGGAGCAGATTGAAGCAGCCAATGAAAAACCAGCTGATAACAGAAGACGGGTTAACCGTCCTCGGGTTGTTCAACAACATGGCCGTCCAGATGGTGGCTAA 1167 0.4362 MGNCWSFQSASAVDHRNSITAPNLNNQSGSIQFSAGTSNNRLIQSSNSTSLGQSSHSGGFSRFFGPSSSNNYSTELKAATKNFRAETLVGEGGFGKVYKGLIRGEGLAIAIKKLNSGSNQGVSEWQSEVNFLGRLSHPNLVKLLGFGREDSELFLVYEFMSRGSLDNHLFGRGANVRPLSWDTRLTIMIGAARGLHFLHSLENAIIYRDFKPSNILLDSKYTAKLSDFGLAKSITSPDQSHISTRIVGTHGYAAPEYIATGHLYVKSDVYGFGIFLVELLTGKRISGIMQLCGETPLRDWVKRNLLNRGYIRNTMDAKLEGKYPSNLALQTAQLALKCIQIEPKVRPSMKEVLERLEQIEAANEKPADNRRRVNRPRVVQQHGRPDGG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2548 388 Gene3D Phosphorylase Kinase; domain 1 70 159 - -
Vra7g2548 388 PANTHER OS01G0588500 PROTEIN-RELATED 74 388 - -
Vra7g2548 388 PANTHER OS01G0588500 PROTEIN-RELATED 14 74 - -
Vra7g2548 388 MobiDBLite consensus disorder prediction 361 388 - -
Vra7g2548 388 Gene3D Transferase(Phosphotransferase) domain 1 160 381 - -
Vra7g2548 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vra7g2548 388 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 74 388 - -
Vra7g2548 388 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 14 74 - -
Vra7g2548 388 SUPERFAMILY Protein kinase-like (PK-like) 55 356 IPR011009 -
Vra7g2548 388 Pfam Protein kinase domain 85 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2548 388 ProSiteProfiles Protein kinase domain profile. 83 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2548 388 CDD STKc_IRAK 89 359 - -
Vra7g2548 388 ProSitePatterns Protein kinases ATP-binding region signature. 89 113 IPR017441 GO:0005524
Vra7g2548 388 MobiDBLite consensus disorder prediction 361 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2548 Vra-Chr7 45818532 45821203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2548 75 376 Receptor kinase-like Gene Family AT4G02010 44.951 5.96e-83 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g2548 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2548 - - pvu:PHAVU_003G139200g 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2548 7 45818532 45821203 Vra7g2548 7 45818532 45821203 ECH