Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2547 ATGGGGAACTGTTGCAATTTTTCATCAGGTTCTAATGGCGATGATCATCCCAACGCGAAGAACCATTTAGGGAGGACTCAGTTCTCTGCTGTTCTCAGCAACAGAAGACTAATACAAAATGACAATTCTACTTCTCGTGGGTGTAGCAATCACTTTGGAGGAACTAGCAGTCTGTTTGGGCCAAGTAGTAGTAATAATCACACATCAGGAAATAACACTAGCACGTCGTTTTGGGGCTCTGAGAATAGCCACACCTCTGGAGTCAGAGATGGAGGGGAGTTTCCTCGTGGTGAGATCTTGAATGCTCCAAATCTGAGAGTATTTACTTTAGCAGAATTGAGGGCTGCCACCAAGAATTTCGGAGCTGGCAGTGTGATAGGAGAGGGGGGTTTTGGTAGAGTATACAAGGGTTTGATTAGAGCTGAGGGATTGAATATTGCCATCAAGAAAAGGAATCCGGAAAGTTTGCAAGGAGTTGCGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTCGTTAAGCTGTTGGGATTTCGGCAAGAGGATAGTGAGCTGTTCCTGGTCTATGAATTCATGCATCGTGGTTCCTTGGATAACCATCTATTTGGAAGAGGTGCAAATGTTCGGCCACTTTCTTGGGATACAAGGCTGAAGGTTATGATTGACGCAGCTAGGGGACTGAATTTCCTTCATTCCATGGAAATGAAAATTGTACATAGAGATTTTAAACCCTCAAATATACTACTTGACGAGACATTTACGGCAAAGTTATCAGACTTTGGGTTAGCCAAATCTTTTTCTTCGCTTGATCAGACTCACGTAACAACACGAGTTATGGGAACTTTAGGCTATGCTGCTCCTGAGTATATAGCAACAGGTCGTTTGAAAGTGAAAAGTGACGTGTATACATTTGGAATTGTTTTGATGGAGGTGCTGACAGGGAAAAGAATGCAAGATATACTGCGATTGCTGAAGCAAAAGTCCTTGACGGATTGGCTCAAATCAAATATACTAAATAGAGGGAAAATAAGAATGAATATGGATGCAAAGTTGGAAGGAAAGTATCCAACCAACTTAGCTTTAGAGGTAGCTCAACTAGCTCTCAAATGCATCCGAACAGAAGCCAAAGTGAGGCCATCAATGAAAGAAGTTCTTGAAAGATTGGAACAGATTGAAGCAGCTAATGAGAAACCAGCTGACAACAATTATAACAGAAGACGTGTTAATCGTTCCCTGGTAGTTCAACAACGCAATCAGCCAGATGGTGGTCAATTCGATTGA 1296 0.4252 MGNCCNFSSGSNGDDHPNAKNHLGRTQFSAVLSNRRLIQNDNSTSRGCSNHFGGTSSLFGPSSSNNHTSGNNTSTSFWGSENSHTSGVRDGGEFPRGEILNAPNLRVFTLAELRAATKNFGAGSVIGEGGFGRVYKGLIRAEGLNIAIKKRNPESLQGVAEWQSEVNFLGRLSHPNLVKLLGFRQEDSELFLVYEFMHRGSLDNHLFGRGANVRPLSWDTRLKVMIDAARGLNFLHSMEMKIVHRDFKPSNILLDETFTAKLSDFGLAKSFSSLDQTHVTTRVMGTLGYAAPEYIATGRLKVKSDVYTFGIVLMEVLTGKRMQDILRLLKQKSLTDWLKSNILNRGKIRMNMDAKLEGKYPTNLALEVAQLALKCIRTEAKVRPSMKEVLERLEQIEAANEKPADNNYNRRRVNRSLVVQQRNQPDGGQFD* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2547 431 MobiDBLite consensus disorder prediction 59 87 - -
Vra7g2547 431 MobiDBLite consensus disorder prediction 59 95 - -
Vra7g2547 431 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g2547 431 CDD STKc_IRAK 126 396 - -
Vra7g2547 431 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 11 428 - -
Vra7g2547 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Vra7g2547 431 SUPERFAMILY Protein kinase-like (PK-like) 101 393 IPR011009 -
Vra7g2547 431 Pfam Protein kinase domain 124 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2547 431 Gene3D Phosphorylase Kinase; domain 1 104 196 - -
Vra7g2547 431 MobiDBLite consensus disorder prediction 401 431 - -
Vra7g2547 431 ProSitePatterns Protein kinases ATP-binding region signature. 126 150 IPR017441 GO:0005524
Vra7g2547 431 Gene3D Transferase(Phosphotransferase) domain 1 197 421 - -
Vra7g2547 431 MobiDBLite consensus disorder prediction 410 431 - -
Vra7g2547 431 PANTHER OS01G0588500 PROTEIN-RELATED 11 428 - -
Vra7g2547 431 ProSiteProfiles Protein kinase domain profile. 120 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2547 Vra-Chr7 45815552 45817985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2547 80 415 Receptor kinase-like Gene Family AT4G02010 42.029 3.45e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g2547 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2547 - - gmx:100813304 610.912