Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2546 ATGGCAGTAGATCTGGCAGCTGTTGCCAAGATTAGGATGGAAGAACAGATAGCCATTGAAGAAGCAGCTTCTGCTGGATTGAAAAGTATGGAGCATCTCATTCGTGTTCTTTCCTCCCAAATCCCTTCCTCTTCTGCTTCTGCCTCTGCCTCTTCCTCTTCTTCCACACACCACCGTCGTCTTAATCTCAACCACCTTGACTGCACTGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCACCTTCTCATCCCTCTCCCTCCCCCTCTCTTCCTTCTCCACCGCAGCCACACGCTCAAAAACTCACTCTTCATTTTGCAAACCCCAAGGTCAAGTCAAATCCCAATCCCAACCCCAACCCTTCTTCCACGGATTTCTCGGTTTCTCAATATTCCAAGTCCAAAGACACCACCTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCTGTCACGGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGAAAAAGGTGTCACGACGCCACCCTCTCCGCCGGGAAAGCCTCATCCTCCGCCCACTGTCATTGCTCCAAGAGGAGGAAATCTCGTATGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGGTCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCCAGAAAGCACGTGGAGCGAGCCCAGGATGACCCTAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCACAGACGCGTCTGCCGGAAGCCGGCGTGGCCAGCCCCGTGGCTTTCGGTGCTCAGCCTGTTTAA 978 0.546 MAVDLAAVAKIRMEEQIAIEEAASAGLKSMEHLIRVLSSQIPSSSASASASSSSSTHHRRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSPSLPSPPQPHAQKLTLHFANPKVKSNPNPNPNPSSTDFSVSQYSKSKDTTFSISPPISTTTSSFMSSVTADGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRMKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQTRLPEAGVASPVAFGAQPV* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2546 325 SUPERFAMILY WRKY DNA-binding domain 244 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g2546 325 MobiDBLite consensus disorder prediction 94 175 - -
Vra7g2546 325 MobiDBLite consensus disorder prediction 123 175 - -
Vra7g2546 325 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g2546 325 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 308 - -
Vra7g2546 325 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 308 IPR044810 GO:0003700
Vra7g2546 325 Gene3D WRKY domain 233 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra7g2546 325 Pfam Plant zinc cluster domain 200 244 IPR018872 -
Vra7g2546 325 Pfam WRKY DNA -binding domain 248 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra7g2546 325 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2546 Vra-Chr7 45790389 45792325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2546 1 311 WRKY Transcription Factor Family AT2G24570 48.980 1.90e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra7g2546 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2546 - - var:108322692 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2546 7 45790389 45792325 Vra7g2546 7 45790389 45792325 ECH
Vra11g0559 11 4295457 4297694 Vra7g2546 7 45790389 45792325 PCT
Vra7g2546 7 45790389 45792325 Vra5g0320 5 3081419 3083045 PCT