Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2540 ATGAGCTTCTCCAAGGGTTATCCTGGCAGCCAGACGCCGGGTGATATTGAGGCCGGGTCTCCCACTGGATGCTCTGATGATTTTGATGATGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGAGGCAAGCAGCACTGGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAATTGAATGGGCTTGGAACTATAAAACCTCATTTGAACTCCACCGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGAGACACTGCTACTCTGCGGGAATGTGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGAATTCGAGGTGATGATACTGACTTGTTAATACGGAGGAATGCATTTGGTTCCAACAATTACCCTCGAGAGTCTGGAAGAAATTTTTTGTCGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTGACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTNGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTACGCTTAAATGGTGTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATCGTTCTGATAGTGCTACTGGCCAGGTATTTCTCTGGGCATACTCGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAATTTGGNGATGCTATTGATGGAGTGATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTACCTTTAGCCGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAAATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGATAACTCCTCATCATACACCAGACCAGTTGTCTGGTATGCTACGCTCTTTGCTGTTTGAAGGTGTTGTGCAGAACACTAATGGAAGTGTTTATGTCCCTGAGAGTGGTAATGATATTGAGATTTCTGGATCACCAACCGAAAGGGCAATATTAGAGTGGGGAATTAAGCTTGGGATGCATTTTGATGATGTCAGATCACAGTCATCAACTATCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGACCACTCCGCAGACAGACTCTGAAATCCATATACATTGGAAAGGTGCGGCTGAGATAGTCCTTGGATGCTGTAGAGGGTATATTGATGTTAATGATCAGCTGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGTCATTGAACATATGGCTGCTGATAGTCTACGGTGTNTTGCGATTGCATTTAGATCATTCGAAATGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTTTTTATTGGCAATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGNGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAANCTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGGTTCAATCTCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCACAAATTGNTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACATGAGGCNGATATTGGTCTTTCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCGGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTATGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCAACTGAACCACCAACTGATTCCTTAATGGATCAGCTTCCAATGGGCAGACGTGAACCGCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCTATTTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAATTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCTTTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCATATAGCTTCAACATTTTCAAGGGAGTCACGAGAAACTACCTCTTTATGGGGATAGTGGTAACAACTGTCGTGCTCCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACAAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAGCTGATACCGGTACCGAAAGCTCAACTCAGTAACGGTGTTCGAACATTCTTTGAAAAATTTAAGAAGACGGAATCTGAGGCGCCTCAACGGATTTAA 3264 0.4213 MSFSKGYPGSQTPGDIEAGSPTGCSDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPHLNSTGEFSIGQEQLSSISRDRDTATLRECEGVVGLSNLLKTNLEKGIRGDDTDLLIRRNAFGSNNYPRESGRNFLSFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGDQVPADGVLISGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKFGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKITPHHTPDQLSGMLRSLLFEGVVQNTNGSVYVPESGNDIEISGSPTERAILEWGIKLGMHFDDVRSQSSTIHVFPFNSDKKRGGVAIQMTTPQTDSEIHIHWKGAAEIVLGCCRGYIDVNDQLVEMDEEKMSYFKKVIEHMAADSLRCXAIAFRSFEMENVPTGEELAHWSLPEDDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKXAKAIAVECGILGSISEATEPIIIEGKRFRALTDEGRAQIXDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQLPMGRREPLVSNIMWRNLLIQAIYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPYSFNIFKGVTRNYLFMGIVVTTVVLQIVIIEFLGKFTKTVKLNWKLWLISVIIAFISWPLAVVGKLIPVPKAQLSNGVRTFFEKFKKTESEAPQRI* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2540 1087 Gene3D - 47 102 - -
Vra7g2540 1087 Gene3D - 194 1050 - -
Vra7g2540 1087 SUPERFAMILY Calcium ATPase, transduction domain A 264 359 IPR008250 -
Vra7g2540 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 764 876 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2540 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 427 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2540 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 231 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2540 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1060 IPR023298 -
Vra7g2540 1087 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 136 1060 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra7g2540 1087 Gene3D - 170 362 - -
Vra7g2540 1087 SFLD p-type atpase 468 848 IPR044492 -
Vra7g2540 1087 SFLD Haloacid Dehalogenase 468 848 - -
Vra7g2540 1087 Pfam Cation transporting ATPase, C-terminus 881 1058 IPR006068 -
Vra7g2540 1087 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1071 - -
Vra7g2540 1087 Pfam Cation transporter/ATPase, N-terminus 148 210 IPR004014 -
Vra7g2540 1087 MobiDBLite consensus disorder prediction 1 40 - -
Vra7g2540 1087 SUPERFAMILY HAD-like 484 901 IPR036412 -
Vra7g2540 1087 Pfam haloacid dehalogenase-like hydrolase 483 810 - -
Vra7g2540 1087 Pfam E1-E2 ATPase 264 464 - -
Vra7g2540 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Vra7g2540 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 693 IPR023299 GO:0000166
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 310 324 - -
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Vra7g2540 1087 PRINTS P-type cation-transporting ATPase superfamily signature 820 832 - -
Vra7g2540 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 488 494 IPR018303 -
Vra7g2540 1087 Gene3D - 496 696 IPR023299 GO:0000166
Vra7g2540 1087 CDD P-type_ATPase_Ca_PMCA-like 171 929 - -
Vra7g2540 1087 PANTHER CATION TRANSPORTING ATPASE 31 1071 - -
Vra7g2540 1087 Gene3D - 483 841 IPR023214 -
Vra7g2540 1087 PRINTS H+-transporting ATPase (proton pump) signature 642 660 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2540 1087 PRINTS H+-transporting ATPase (proton pump) signature 796 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g2540 1087 PRINTS H+-transporting ATPase (proton pump) signature 828 853 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2540 Vra-Chr7 45712220 45736783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2540 2 1083 Primary Pumps ATPases AT5G57110 68.756 0.0 1506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2540 K01537 - gmx:100790157 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2540 7 45712220 45736783 Vra7g2540 7 45712220 45736783 ECH
Vra7g2540 7 45712220 45736783 Vra5g0327 5 3146410 3171490 PCT