Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2533 ATGGACAATATGGGTGGGGAGTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGCTGGGCAATGGATGAGGCAGCGATGTCCGGGTACTATGATTCAAGCTCACCAGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCAGTGGTCCCCAACATCAGTAAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACTTATGAATTTGAGCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAACAGCTATTTGATTCTGCCACTTCAAGAAATTCCCCAATTGAAGTAATTGAGCTGAGGGTTGCATACATGGGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGATAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAGATCATTGCAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATTGAGGCTGATGAACAAGAGAAAGATGTTCTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTGAATGGTCCTCAAAGCCCAATGAGTATCTGA 723 0.4357 MDNMGGEYNHFWDTFFQNQELDSWAMDEAAMSGYYDSSSPDGGASSMASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIEAEILDLESGKLKNPTYEFEHDLPILLRSKKKRTEQLFDSATSRNSPIEVIELRVAYMGDKTFVVSLTCSKRIDTMVKLCEVFESLKLKIIAANITSFSGTLLKTVFIEADEQEKDVLQIKIQTAISALNGPQSPMSI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2533 240 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Vra7g2533 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 234 - -
Vra7g2533 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Vra7g2533 240 Gene3D - 44 112 IPR036638 GO:0046983
Vra7g2533 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vra7g2533 240 SMART finulus 52 101 IPR011598 GO:0046983
Vra7g2533 240 PANTHER TRANSCRIPTION FACTOR BHLH35 7 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2533 Vra-Chr7 45625542 45632648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2533 2 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.346 1.29e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g2533 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2533 - - gmx:100803916 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2533 7 45625542 45632648 Vra7g2533 7 45625542 45632648 ECH
Vra7g2533 7 45625542 45632648 Vra5g0334 5 3282973 3289269 PCT