Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2527 ATGCGGTACAGCGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGTACGTACAAAAGGGAAGAAGGATAAAATGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTAGCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTCGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATCAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTTGGCAATTGCTCCAGGTGGATCTTGTTGTCAAAAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTGTGGAACCTTCTTTAGACACTGAAAATGTTCCTCTTGCAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGAAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAACCACAATATCAACATGGAAGGAACTGATGATAGTGCGTCTGATGATTTAAGTAGTTCTACAAGTCTGTGTTATTCCGATGATGAACATTCTCCAGTACATGGTGTCAGTCACGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCAGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATACACCCCAATAATGAGCACAACAAAATGACAAAAAACATTTCTTCAGGCACAAATATCAAAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACATATGGGAATCACTTCCACATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGACTGTATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGCTGTTAAAGTTTACATTTGGAGGAGATTCTGAGACGGCAGAGTTGGAATTGGAAAGATTGTGCAAATTGAAGCAAAAAGTAATTAGTATGAAGGAAAAATTAACAAGAATTCAAAGGTTGGATGTAAAGGGTTCAGATGAAGGCCATTCTAATGAACAACCATCCATTGTATATGTACCCACAGCTGTATTAAGGGAAAAAACTGAATGA 2097 0.3944 MRYSVKKSNDKGSKKSGHLKVRTKGKKDKMKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLAGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDLAIAPGGSCCQKHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVEPSLDTENVPLAGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPEEEWPSDDSEDDDYDPERKEDNHNINMEGTDDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENIHPNNEHNKMTKNISSGTNIKRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKHQAEGAANQHMGITSTLQNQEKTDLLKPKTLKITTSHSQKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDCMEMSDDVSLKKLLKKKKKRLLKFTFGGDSETAELELERLCKLKQKVISMKEKLTRIQRLDVKGSDEGHSNEQPSIVYVPTAVLREKTE* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2527 698 MobiDBLite consensus disorder prediction 69 93 - -
Vra7g2527 698 SUPERFAMILY FYVE/PHD zinc finger 214 280 IPR011011 -
Vra7g2527 698 Pfam PHD-finger 222 277 IPR019787 -
Vra7g2527 698 SMART PHD_3 222 275 IPR001965 -
Vra7g2527 698 MobiDBLite consensus disorder prediction 319 333 - -
Vra7g2527 698 CDD homeodomain 477 538 IPR001356 GO:0003677
Vra7g2527 698 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Vra7g2527 698 CDD PHD_PRHA_like 222 274 IPR045876 -
Vra7g2527 698 MobiDBLite consensus disorder prediction 346 366 - -
Vra7g2527 698 Gene3D - 459 541 - -
Vra7g2527 698 MobiDBLite consensus disorder prediction 563 612 - -
Vra7g2527 698 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Vra7g2527 698 MobiDBLite consensus disorder prediction 563 577 - -
Vra7g2527 698 PANTHER POLYCOMB PROTEIN PCL 8 668 - -
Vra7g2527 698 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Vra7g2527 698 SUPERFAMILY Homeodomain-like 477 545 IPR009057 -
Vra7g2527 698 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Vra7g2527 698 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 8 668 - -
Vra7g2527 698 SMART HOX_1 476 538 IPR001356 GO:0003677
Vra7g2527 698 MobiDBLite consensus disorder prediction 1 16 - -
Vra7g2527 698 MobiDBLite consensus disorder prediction 26 44 - -
Vra7g2527 698 MobiDBLite consensus disorder prediction 313 370 - -
Vra7g2527 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 282 IPR013083 -
Vra7g2527 698 MobiDBLite consensus disorder prediction 1 132 - -
Vra7g2527 698 MobiDBLite consensus disorder prediction 94 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2527 Vra-Chr7 45565335 45569795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2527 125 539 Homeobox Transcription Factor Family AT4G29940 52.607 5.52e-134 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vra7g2527 Homeodomain 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2527 - - gmx:100815437 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2527 7 45565335 45569795 Vra7g2527 7 45565335 45569795 ECH
Vra7g2527 7 45565335 45569795 Vra5g0338 5 3326955 3333200 PCT