Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2517 ATGGAGAGTAAAAAATTGCAGAAGAGCTACTTTGATGTGTTGGGTTTGTGCTGCTCCTCTGAAGTACCACTCATCGAAAACATCTTAAAGCCACTTCAAGGAATCAAAGAGGTTTCTGTCATAGTTCCTTCACGAACTGTCATTGTTCTGCATGACACTCTTGTCATTTCGCAACTTCAAATCGTTAAGGCATTGAATCAAGCGAGATTAGAAGCTAATATCAGAGTACATGGAGATGAAAATCATGGAAAAAGATGGCCAAGCCCTTACTCAATTGCTTCGGGTGTTCTACTTTTGGTTTCTTTTCTGAAATTTGTGTATCCTCCTTTGAAGTATGTAGCACTTGGTGCAGTTGCTGCTGGTATTTACCCTATCTTCCGAAAGGCCATTGCCTCCATTCGTAATCTTAGGGTTGACATTAGCATTCTCATGATCATAGCAGTTACTGGGACAATTGCCATGCGTGATTATTTGGAAGCTGGCACCATCGTTTTCCTCTTCTCAATTGCAGAATGGTTAGAATCAAGGGCAAGCCACAAGGCAACTGCAGCAATGTCGTCTTTGATGAACATAGCCCCTCAAAAAGCAGTCATAGCTGATTCGGGAGAAGTTGTGGATGCTGATGAGGTGAAATTAAATACCATTTTAGCTGTTAAAGCAGGTGAGGTGATACCCATTGATGGAGTTGTTCTAGATGGAACCTGTGAAGTTGACGAGAAAACTTTGACTGGGGAATCGTTCCCTGTGGCAAAACAAAAGGATTCTACTGTATGGGCTGGCACCATCAATTTGAATGGTTATATCAGTGTGAAAACTACTGCACTGGCTGAAGACTGTGTGGTGGCTAAAATGACAAAACTCGTGGAAGAAGCTCAAAACAGCAAAACCAACGTTCAGACATTGATTGAGAAGTTTGTCAAGTTTTATACCCCTGCCGTTGTAATCATATCAACCCTTGTAGCAGTGATTCCACTTGCGTTAAAATCACGTAGAGAGAAATACTGGTTTCACTCAGCGTTGGTTGTTTTAGTGAGTGCATGCCCATGTGCACTCATCCTATCAACTCCAGTTGCAACCTTCTGTGCTTACACCAGAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTCATCATCTTGAAACACTTGCAAAAATCAAGGTCATGGCCTTTGACAAAACGGGTACCATAACGAAGGGTGATTTTGTGGTTACAGAGTTTCAATCTCTTTCAGATGACATAGATCTCAACACATTGCTTTTCTGGGTGTCAAGTGTGGAGAGCAAGTCAAGCCATCCACTGGCATCTGCCATTGTTGATTATGGAAGGTCTCTCTCAGTTGAACCAGAGCCAGAAAAGGTGACAGAATTTGAAAACTTTCCTGGGGAAGGAATCAGTGGAAAAATGGATGACAAAGTTATTTACATTGGAAATAAAAAAATTGCCGCAAGAGCCGGGTCTGAAACAGTTCCAATATTACAAGGAGAAAATGCAAGAGGAAAGACCACTGGATACATATACTTAGGAGCAACCGCAGTTGGATTTTTCTCTCTTTCAGATGTTTGCAGGTTAGGTGTTGAGGAAGCAATTGGGCAGTTGAAGTTAATGGGAATCAAAACAGCCATGCTCACTGGAGACAGTGAATCTGCTGCAATGCAAGCACAGGAGCAGCTGGGACATTCTCTGGAGTTAGTCCATGCAGAACTGTTGCCAGAGGACAAGGTCAAAATCATCTCAGAATTTAAGAAGGAAGGTCCGACAGCCATGATCGGAGATGGTATAAACGATGCGCCGGCATTAGCTTCAGCTGATATCGGAATCTCAATGGGCATTTCAGGTTCTGCACTTGCAAGTGAGACAGGAAATATAATTCTTATGTCAAATGACATTAAGAAGATACCTGAAGCCATTAAGCTTGCAAGAAAAACACGATGGAAAGTGCTTCAGAACATTATTTTGTCAATCACTACCAAGGCTGCGATTATTGGTTTGGCCATTGGTGGTTACCCATATGTTTGGGCAGCAGTGGTTGCTGATGTTGGAACGTGTCTAGTGGTCATCTTGAACAGCATGTTACTTCTTCCAAGAGGCCATAAACATGGAGGAAAATCTTGTAGATCTTCAACTAAGTCTCATAACCACAAAAGTGGGTGTGCTGGCACTCATGGCCATGATCATGCTCACCACCAACATCAACATTGTCATGATCAAAACGGGCATNNTCACCACCAACGTGAACATTCTCATGATCAAAACGGGCATGCTCACCATCAACATCAACATTGTCATGATCAAAACGGGCATGATCACCACCAACATGAACATTGTCATGATCAAAACGGGAATGCACACCACCAACATCAACATTGTCATGATCAAAAGGGGCATGATCACCACCAACATCAACATTGTCATGATCAAAAGGAGCATGATCACCATCACCATCAACACAAGCATGAGCATGATCACCACCACCTAGATCAACACGATCATGGGCATGATCACCACCAGCCTCAACACGAGCATGATCACCATGACCACACCGACAACCATAACAAATCAGTTTGTCATCCAGACAATGAGAAGAATGGGACAGGTGAAATATCCGTTGACATCATCGCTGACCATGTTGAATCAGCCCCAATGAAGGGTTGTTCAAGTTTGGCAGAAAAAGAGAAAGGTTCCTGCTGTGAAGGCTGCTCAGACACGTGCGAGAATTTGGCTGTTGTGTGTGGGTGTGAGAGTTCAAAAGAGGGAGAAGACAGTGCATGTTGCAGAAATGAATGCTCTTCAAAAGCATGCAACGAATCTCCAATTATTCATGTTTGTGTTGGTTTGGATAAGAGAGAATATGGTGGATGTTGCAAGAGCTACATGAAGGAATGTTGTGGCAAACTTGGACACTCAAGAACTGGTTTTGTTGGAGGTTTGTCAGAAATTATGACGGAATAG 2949 0.4293 MESKKLQKSYFDVLGLCCSSEVPLIENILKPLQGIKEVSVIVPSRTVIVLHDTLVISQLQIVKALNQARLEANIRVHGDENHGKRWPSPYSIASGVLLLVSFLKFVYPPLKYVALGAVAAGIYPIFRKAIASIRNLRVDISILMIIAVTGTIAMRDYLEAGTIVFLFSIAEWLESRASHKATAAMSSLMNIAPQKAVIADSGEVVDADEVKLNTILAVKAGEVIPIDGVVLDGTCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMTKLVEEAQNSKTNVQTLIEKFVKFYTPAVVIISTLVAVIPLALKSRREKYWFHSALVVLVSACPCALILSTPVATFCAYTRAATSGLLIKGGHHLETLAKIKVMAFDKTGTITKGDFVVTEFQSLSDDIDLNTLLFWVSSVESKSSHPLASAIVDYGRSLSVEPEPEKVTEFENFPGEGISGKMDDKVIYIGNKKIAARAGSETVPILQGENARGKTTGYIYLGATAVGFFSLSDVCRLGVEEAIGQLKLMGIKTAMLTGDSESAAMQAQEQLGHSLELVHAELLPEDKVKIISEFKKEGPTAMIGDGINDAPALASADIGISMGISGSALASETGNIILMSNDIKKIPEAIKLARKTRWKVLQNIILSITTKAAIIGLAIGGYPYVWAAVVADVGTCLVVILNSMLLLPRGHKHGGKSCRSSTKSHNHKSGCAGTHGHDHAHHQHQHCHDQNGHXHHQREHSHDQNGHAHHQHQHCHDQNGHDHHQHEHCHDQNGNAHHQHQHCHDQKGHDHHQHQHCHDQKEHDHHHHQHKHEHDHHHLDQHDHGHDHHQPQHEHDHHDHTDNHNKSVCHPDNEKNGTGEISVDIIADHVESAPMKGCSSLAEKEKGSCCEGCSDTCENLAVVCGCESSKEGEDSACCRNECSSKACNESPIIHVCVGLDKREYGGCCKSYMKECCGKLGHSRTGFVGGLSEIMTE* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2517 982 SUPERFAMILY HMA, heavy metal-associated domain 4 73 IPR036163 GO:0046872
Vra7g2517 982 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Vra7g2517 982 MobiDBLite consensus disorder prediction 717 808 - -
Vra7g2517 982 Pfam haloacid dehalogenase-like hydrolase 385 603 - -
Vra7g2517 982 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 141 692 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra7g2517 982 Gene3D - 2 76 - -
Vra7g2517 982 Gene3D - 400 521 IPR023299 GO:0000166
Vra7g2517 982 SFLD C1.7: P-type atpase like 372 642 - -
Vra7g2517 982 SUPERFAMILY HAD-like 388 690 IPR036412 -
Vra7g2517 982 SFLD p-type atpase 372 642 IPR044492 -
Vra7g2517 982 PRINTS Copper-transporting ATPase signature 180 198 - -
Vra7g2517 982 PRINTS Copper-transporting ATPase signature 311 325 - -
Vra7g2517 982 PRINTS Copper-transporting ATPase signature 567 584 - -
Vra7g2517 982 PRINTS Copper-transporting ATPase signature 624 638 - -
Vra7g2517 982 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Vra7g2517 982 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 713 - -
Vra7g2517 982 Coils Coil 284 304 - -
Vra7g2517 982 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 3 713 - -
Vra7g2517 982 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 140 693 - -
Vra7g2517 982 MobiDBLite consensus disorder prediction 822 859 - -
Vra7g2517 982 MobiDBLite consensus disorder prediction 698 866 - -
Vra7g2517 982 SUPERFAMILY Calcium ATPase, transduction domain A 202 288 IPR008250 -
Vra7g2517 982 CDD P-type_ATPase_HM 92 691 - -
Vra7g2517 982 SUPERFAMILY Calcium ATPase, transmembrane domain M 141 661 IPR023298 -
Vra7g2517 982 PRINTS P-type cation-transporting ATPase superfamily signature 238 252 - -
Vra7g2517 982 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Vra7g2517 982 PRINTS P-type cation-transporting ATPase superfamily signature 535 545 - -
Vra7g2517 982 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Vra7g2517 982 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Vra7g2517 982 ProSitePatterns Hypothetical cof family signature 2. 589 611 - -
Vra7g2517 982 Gene3D - 380 640 IPR023214 -
Vra7g2517 982 Pfam E1-E2 ATPase 199 367 - -
Vra7g2517 982 Gene3D - 177 292 - -
Vra7g2517 982 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 163 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2517 Vra-Chr7 45463544 45472870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2517 1 982 Primary Pumps ATPases AT4G30110 54.032 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2517 K01534 - gmx:100817567 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2517 7 45463544 45472870 Vra7g2517 7 45463544 45472870 ECH