Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2497 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGCATGAAACTGCGACAGGCCCTGAACCACATTCTTCGTCTGCATCTGGTCAGAAACCTGCTAAGAGGCAGAGAAAATCTGAGAATCCTTCTCATTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATTCATTTTGTAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAGTATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTGAAACATGATGGTTCTGGAATTGGCAAAGATGGGGATCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCCGAGGTTCAGAAACAATGTGGTTTTGCTCTTGAATCGCTTGATTCAATGCTTTCGAAAAGGATTTTACCATCATCACCCAATCTAACAACTCAAGATGCACATTTGGTGGCTCCAAATATGGTGAGGTTTGAAGATGTCAGTGCCACATCCCTGACTATTATTTTGGGTTCCGATGAACCCTCTGGTGAAAACATCGCTGCTTACACCATGTGGTACCGCAAAGCTGATGAAGTGGACTATCCAATGGAGCCAACATGCACCTCGCTGGTACCAAATAGAAGGTTAAGTGTCAGGGGTCTACTTCCAGGTACAGAATACAGATTCAAAGTTGTTCCAAATGATTCGAGGGTGTCTGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTCCCTAATTGCTCTGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTAGAAGATGAAACTAATAACTGCAATCCATACAGTGACCTGACCAATAACCGAGCAGGTCATTATCCTTCTTTTCGCAAGGAAAGCGACCAGCTTGCTCCTGGAAATTTATCTAATGATGGTGTTAACTGTTCCAACATAGATGTTGTGGGTCTTCCTCCAGATGCAGATTCTTTGTCAGACAAGCAGCATGCCGTAGGAATGACTGCCTCGATACCCAGTTCTGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACTGACATCATGAGCATTGACGATGGTTTGAATTCCCCAGTTGTAACGGGTAGGGAATGTGTGCCGTGGGTAGCTAGCTCGGAAGGAGGGTTGCCAAATACTCCGTGCAAGTTGGAAAGCCTTAAGGATGGAGCAGGAAGGATTGGAAGATCGAAGTCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGCCCACAGGATGGAAGCACATCGAAGAAGAGAAGCGGAGAAAGGCAAGATGAGGGCCGCTTGACCAATGGATTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGCGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTGCCATCCGGGTTCTGCTTGAAGCTTTGGCATTGA 2214 0.4417 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETATGPEPHSSSASGQKPAKRQRKSENPSHLPVPVTSISVNNGSDSVNTTYCKNSACKATLNQADSFCKRCSCCICHQYDDNKDPSLWLVCSSENPFPGVSCGLSCHLECALKHDGSGIGKDGDRPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSMLSKRILPSSPNLTTQDAHLVAPNMVRFEDVSATSLTIILGSDEPSGENIAAYTMWYRKADEVDYPMEPTCTSLVPNRRLSVRGLLPGTEYRFKVVPNDSRVSGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTNNRAGHYPSFRKESDQLAPGNLSNDGVNCSNIDVVGLPPDADSLSDKQHAVGMTASIPSSDVLKLEDKHSPEEQVTDIMSIDDGLNSPVVTGRECVPWVASSEGGLPNTPCKLESLKDGAGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRLTNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPSGFCLKLWH* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2497 737 MobiDBLite consensus disorder prediction 93 107 - -
Vra7g2497 737 CDD FN3 346 420 IPR003961 GO:0005515
Vra7g2497 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 - -
Vra7g2497 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 IPR044514 GO:0010048|GO:0040029
Vra7g2497 737 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Vra7g2497 737 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Vra7g2497 737 MobiDBLite consensus disorder prediction 442 506 - -
Vra7g2497 737 SUPERFAMILY Fibronectin type III 344 424 IPR036116 GO:0005515
Vra7g2497 737 Pfam Fibronectin type III domain 346 419 IPR003961 GO:0005515
Vra7g2497 737 MobiDBLite consensus disorder prediction 442 486 - -
Vra7g2497 737 Gene3D Immunoglobulins 329 430 IPR013783 -
Vra7g2497 737 MobiDBLite consensus disorder prediction 86 129 - -
Vra7g2497 737 CDD PHD_VIN3_plant 161 226 - -
Vra7g2497 737 MobiDBLite consensus disorder prediction 589 644 - -
Vra7g2497 737 MobiDBLite consensus disorder prediction 600 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2497 Vra-Chr7 45242185 45247299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2497 4 605 PHD Gene Family AT4G30200 48.428 6.50e-167 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2497 - - gmx:100794721 1338.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2497 7 45242185 45247299 Vra7g2497 7 45242185 45247299 ECH