Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2496 ATGGATTCTTCTTCTTCATCACCGCCAAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCACCTCTTATCCATCTCTAACACTCACAGGCAGCAACACGGTGGATGCATCACCGGAGGCACCAGGCCGCGTAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACACCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTCAAGACAACAATAGCCGCGTGCTTTCCTCGCGGCTTCGCCGTCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACCCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACAACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGGGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTATGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAAAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGCGGATTCAGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCCGTCATCGGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGAAACACTACTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCATCAAAGTGGTCATGGTCATGGTAATGGGAATGGTAATGGTCATGGTCATGGTCATGGAAATGGAAGCAGCGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCAATATTTGGCATGGAATGA 1578 0.5044 MDSSSSSPPNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGSNTVDASPEAPGRVGATNLSIFTAAPKFEDFLGSSATPDTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAVEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSADSASESKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTTSVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQHQSGHGHGNGNGNGHGHGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2496 525 MobiDBLite consensus disorder prediction 356 376 - -
Vra7g2496 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 132 424 - -
Vra7g2496 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 424 - -
Vra7g2496 525 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Vra7g2496 525 MobiDBLite consensus disorder prediction 340 355 - -
Vra7g2496 525 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Vra7g2496 525 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Vra7g2496 525 MobiDBLite consensus disorder prediction 448 469 - -
Vra7g2496 525 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 MobiDBLite consensus disorder prediction 326 376 - -
Vra7g2496 525 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Vra7g2496 525 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Vra7g2496 525 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2496 Vra-Chr7 45219413 45222938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2496 96 398 AP2-EREBP Transcription Factor Family AT5G57390 68.615 6.45e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra7g2496 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2496 K09285 - gmx:100797828 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2496 7 45219413 45222938 Vra7g2496 7 45219413 45222938 ECH