Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2490 ATGAACAGCTTTGACCCCCAAGGACAAGAAGACTTGTTGAAACAGATCACTGGCGCACCTTCAACTTCCTCTTCTTTGGCAGGCTTTCCTGGGCTTGAGGACGATGATCTTGTCGCCACCGTGGTTCCAGCTGTAACAGTTGTGCTAGAGGGTCGTTCCATCTGCCAGCGCATCAGCCTCCATAACCATGGTAGCTACCAAAGTCTGGCCAAAGCCCTACGCGAAATGTTTGTGGAAAACGCTGGAGACAGTGATGATTTTGATCTTTCCAATGTCATTCCTGGCTACCTTATTGCCTATGAAGACATGGAGAACGATCTTCTTCTAGTCGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGTATAATTCCAACCAAGGCTAACTCAAGAAAAGGTTCAACAGGAACAGCATAA 429 0.4709 MNSFDPQGQEDLLKQITGAPSTSSSLAGFPGLEDDDLVATVVPAVTVVLEGRSICQRISLHNHGSYQSLAKALREMFVENAGDSDDFDLSNVIPGYLIAYEDMENDLLLVGDLSWKDFVRVAKRIRIIPTKANSRKGSTGTA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2490 142 SUPERFAMILY CAD & PB1 domains 47 127 - -
Vra7g2490 142 Pfam AUX/IAA family 43 129 IPR033389 -
Vra7g2490 142 Gene3D - 40 140 - -
Vra7g2490 142 ProSiteProfiles PB1 domain profile. 42 132 IPR000270 GO:0005515
Vra7g2490 142 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 22 137 - -
Vra7g2490 142 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 137 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2490 Vra-Chr7 45149336 45150574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2490 44 141 B3 DNA Binding Superfamily AT5G62000 30.612 4.30e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra7g2490 AUX_IAA 5.3e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2490 - - vra:106766495 266.544