Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2476 ATGGAAGAACAACAATCTACACAACACCAAAACCATGACTTCATTTTCCGTTCCAAACTGCCCGACATTTACATTCCCACGCACCTCCCTCTCCACACTTACATCTTCCAAAACATCTCCCAATTCAACAACCGACCCTGCCTCATCAACGCCGCCACCGGAGAATGCTTCACCTATGCCGAAGTCCAACTCACCGCTCGCAGAGTCGCCGCCGGCCTCAACAAACTCGGCATCCAGCGCGGCGACGTCATCTTCCTTCTCCTCCGGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCTTCTGCGGCGCCATGATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAACGCCAAACTCATCATAACGCAGGCGTCCTACGTGGATAAAGTGAAGGATTTCGCGAGGGAAAACGACGTCAGAGTGATGTGCGTTGACGCGGCGCCGGAAGGTTACCTTCACTTCTCGGAGTTGACGGAGGCAAACGAGAAAGACATTCCCGGCGTTAAAATATCCCCGGACGATGTGGTTGCGCTGCCGTATTCTTCAGGAACGACGGGGAATCCGAAGGGAGTGATGCTAACGCACAAGGGGATGGTTACGAGCGTGGCGCAACAAGTGGACGGAGAGAACCCTAATCTGTATATACGCAGCGAGGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATGCTCTGAACAGTGTTTTGCTCTGTTCTCTTCGAGTTGGGGCTACCGTTTTGATAATGGCCGAATTTGATATTGTTAAGTTGATAGAGTTAGTTGAGAAACAGAGGGTAAGCGTGGCGGCTTTTGTGCCGCCCATCGTATTGGCGATTGCGAAGAGTCGAGATTTGCAGCGATACGACCTGTCGTCGATTCGAATGATTATCTGTGGTGCAGCACCCGTGGGAGAGGAACTTGAGAATTGTATGAGGGCGAAACTACCCAACGCTATATTTGGTCAGGGTTACGGGATGACAGAAGCGTTAGCTATTTCATACTGCTTATCCTTTGCGAAGGAAGCAGTGGAAATGAAATCAGGTTCGAGCGGGAGCGTGGTAAGAAACGCGGAGATGAAGATCGTTCACCCTCAAACTGGTGCTTCGCTCCGTAGGAACAAAGCAGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAACGACGAAGAGGCAACAAAAAATACAATAGATAAGGAGGGATGGTTGCATACGGGTGATATTGGGTACATGGATGATGATGATGAACTTTTCATCGTTGATCGATTGAAGGAATTGATCAAATACAAAGGATTCCAAGTGGCTCCAGCGGAGTTGGAAGCCATTCTAATTGCTCACCCCAATATTTCAGATGCTGCCATTGTGGCCATGAAGGATGAAGTTGCAGGAGAAGTTCCAGTGGCGTTTGTTGTAAGATCAAAAGGTTCTCATATATCTGAGCAAGAAATCAAGCAATACATCTCAAACCAGGTTGTGTTTTATAAAAGAATCAGCAAGGTTTTCTTTGTGGGCTCCATTCCAAAGTCTGCCTCTGGAAAGATCTTGCGAAGAAAAATCACGGCAAGGCTTTGA 1620 0.4932 MEEQQSTQHQNHDFIFRSKLPDIYIPTHLPLHTYIFQNISQFNNRPCLINAATGECFTYAEVQLTARRVAAGLNKLGIQRGDVIFLLLRNCPQFVFAFLGSSFCGAMITTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFARENDVRVMCVDAAPEGYLHFSELTEANEKDIPGVKISPDDVVALPYSSGTTGNPKGVMLTHKGMVTSVAQQVDGENPNLYIRSEDVVLCVLPLFHIYALNSVLLCSLRVGATVLIMAEFDIVKLIELVEKQRVSVAAFVPPIVLAIAKSRDLQRYDLSSIRMIICGAAPVGEELENCMRAKLPNAIFGQGYGMTEALAISYCLSFAKEAVEMKSGSSGSVVRNAEMKIVHPQTGASLRRNKAGEICIRGNQIMKGYLNDEEATKNTIDKEGWLHTGDIGYMDDDDELFIVDRLKELIKYKGFQVAPAELEAILIAHPNISDAAIVAMKDEVAGEVPVAFVVRSKGSHISEQEIKQYISNQVVFYKRISKVFFVGSIPKSASGKILRRKITARL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2476 539 CDD 4CL 25 533 - -
Vra7g2476 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 538 - -
Vra7g2476 539 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Vra7g2476 539 Gene3D - 6 439 IPR042099 -
Vra7g2476 539 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Vra7g2476 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vra7g2476 539 Gene3D - 440 539 IPR045851 -
Vra7g2476 539 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 11 538 - -
Vra7g2476 539 Pfam AMP-binding enzyme 37 445 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2476 Vra-Chr7 45006640 45012616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2476 1 507 Monolignol Biosynthesis Gene Families AT1G51680 65.444 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2476 K01904 - gmx:100779668 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2476 7 45006640 45012616 Vra7g2476 7 45006640 45012616 ECH