Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2474 ATGTCCCTCTATCTCACTCAATACCCTCACTCTTTCACTCAATATACTACTATTTCTGTCTGCAGGAACAGTGAACCTTTCAGCCTCTTATATTACATAAACATCCTCTCTCAACACCCCCACTTCGCACCCTATATCCTTTCCTCTCTATTGCTTTCTTTCCCACACTACTTGCTCCATACTCATTCTAGGAACCACTGCAACTACCTTCTACACCCTCTTATGGCCATGAATTTCCATCCCAATACTTCTCTTCACCTAAGCCAATCGGACGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCTCCCTCACCTATAAGTCCCATTGAGCCCCGGATATTCTCATGCAACTATTGCCAGAGAAAATTTTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACTCTAGCCAAGAAAAGCAGGGAAATGAGTTCAACCATGCAGTCTTACGGAGCACCGGAGCAAAGATCAAACTTCAGTCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTCGCCGGAAGAAAAGAATACAGCTTTGGAACCAAGGAAGGGGTGGCTTCCTGGTCAAGGGGTTATGCTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 720 0.4528 MSLYLTQYPHSFTQYTTISVCRNSEPFSLLYYINILSQHPHFAPYILSSLLLSFPHYLLHTHSRNHCNYLLHPLMAMNFHPNTSLHLSQSDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGAPEQRSNFSPSHHLGRALGVNVVDNQGQSYVRLAGRKEYSFGTKEGVASWSRGYASEHVQEDIGQLDLSLRL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2474 239 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Vra7g2474 239 PANTHER BNAC02G44440D PROTEIN 77 239 - -
Vra7g2474 239 SUPERFAMILY beta-beta-alpha zinc fingers 121 151 IPR036236 -
Vra7g2474 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Vra7g2474 239 PANTHER ZINC FINGER PROTEIN JAGGED 77 239 IPR045320 GO:0003700
Vra7g2474 239 Gene3D Classic Zinc Finger 116 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2474 Vra-Chr7 44983960 44985316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2474 77 159 C2H2 Transcription Factor Family AT5G57520 67.816 1.92e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g2474 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2474 - - vra:106768043 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2474 7 44983960 44985316 Vra7g2474 7 44983960 44985316 ECH