Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2463 ATGTGTAATAAAGGGTTTCAATGCTTGAACGAGTGTGAGAGTGAAGTTGATCAAAGGCAAGAGTTCTTCGTCATGGATAGTCCAATTCGATCGCCAGCTGCCGGTTCAGGCTCCGGCGAAGATAGCCGGCGTGTTAAGTTTTTGTGCAGCTTTCTGGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTACGTCGGTGGCGAGACACGAATTGTGAGTGTTTGTAGAGATATTAGCTACGAGGAGTTGATGGTGAAGATGAGAGAGTTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAACCCGACGAGGATCTTGATGCTCTTGTTTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAAGAGTATGACAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATATTTTTGTTTTCACAATCCGAACAGGATGGTTCCTCACATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAATGATGTTGCTGACTTTAGGAGGTTGCAACAAGGAGAGTTTCCAATGATTAGCCCTGTTGAGGATATCCATGTGGCTGGTGAACAGTTTTTCAATCCAATGAGTGTGGAAAGTGGGATTCATTCTCACAGAAGTGGGGACCTATCTATGCCACCTTATAACATGCATCATCTCTCGATCCAGCACCCGCAACCTGTGGGCCCAAGGTATACTGAAATGGATTCTCCTTGGAATCCTGCTTATTACTCTCCTAGGCACCATGGTCTCCACGACTCCAGATCATTAGTTGAATTTCCATCTTCGCCGTCTGGTAGGTACCGAATGCCATTTCCAGAGTTACCAGATAAGTGCATTGATCGAGGGCCGGAAGACTATGCTCGACATCATGTAAACCACCATCCTTTGTATGATAATCAGCAGCAGTATGCTGATAATGTTTTGTGGGTGCCGACAGGAGCAGCACATTCTGAAAAGACAGGTTTTCCAGCCAATATTCTTCATGGTTCCCATGTTGTTGATGGGAACAACATATGTGAGCAGTGTCGCATGGGTTTTCAGAGAGGTCAACCACATCTTGAACATTCTAATATAAGTAATGGACTTCTACCGGTTGCTAATCCATGTGGAGAATGCCCCCTGCCAAATAGGGATGCTTTCCCCATGAATGTTGATACAAAGTTACATCCAGCAATGTATCCCAATGAACCTAATGGTGATCACAGGTCTGTTTATAATGATACTCAAAATCATGAGAGAGGTTGGGGTTTGCAGCATCCAACAACTGCTCGGGTTGAGGAATCAAGAGGACATTTATCTGTATCAGGAAGAGTGGGTGATGTTCCAGTTGCAAATATCCCTCTTGGGCATGGTAGTGTGACCGATGGACATGCCCTGTCGTCCAATTATCTCCATCAGCCGGTTGGACCTGAATTGGGTACTGAACTTTTCCCTGACCAAACCCTGACTGCATCACCACACGTACAAATTGCTCCACTTGAAGAATGCAATGTGCGGTACGGAAATCCATCTCCTTATGGAGTAGACAGTAATTATGCTGTGCCCCGTGGGCATCCATCTGGTTTATGGAGGAATACTACAATTCCTGTTCATTTGGGACCATCTCATGAGGCAAATACCTCACCTCCGCAAGTGAATGGTATGATAAATGCGGCATTAGTCAGGGGAGAAGGCAGTCCAGGGTTTTACATTGGACCAGATACTCAAAATCAATGGGTTGATTCCTCACAGAAATTGACAGGACATGATTGTAAAGCCATCCCAGAATATTCGCATGCACATGCTCTGCAGTTGAATCCAACACTCCTTGGTCCAGAGAATCAGCACCCAGTTACTGTAGATACCATTCACCCTCCACAGGACGTGAGTACTGGTACCTGCTTGGAACCTTTGCAGGTTCCAATATCATCTTATAATATGGTTCATAATCAAGAGGTTTTAAGAAATGACACCAGTTTGGCTACAGCAAAGACTTTCGAATCAAATACTTTGCTTGGAGAAGGAATAGTGGTAAAAATTGAGGACAAGGTTAAAGGCCCTGACACGCAGACTGTATCATATTCAGAGCAAAATAAAGTTGCTGAGAATGCATGTCTAGCTGCTGCTTCTGTTGATTCTAATAATTCAAAGTCTAAACCTGAAGGAGACTGCAGGCATGTTGAGAAACTGGCTGATGAGGACCATTCTGTTCCACAAGATTATAAGCATTTAGGTAATCAATTAAGCCTCTTGCCTGAGTTGATTGCTTCTGTGAAAAGGGATGCATTAGAAGTTGTTGAAGAGGTGAAAACTGCTGCTAAAGATGACCCAGCCAATTCTCATAATCAAAATTTAGACGCCAAGGAAAAGACAATAAATGAAGTAGAGCCAGCGAATGCTAATGGTGATTTAGAATTGAACTCTGAAAGTGACCATGTAGATACTTCTAAAATTGAGCCTACGAAGGCTGAGGAAGAAGCAATTGCCAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATTACAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCTGACAGTTCTTTAGCAACAGTCACCGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATTGATCGTCGTAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGCCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGTGGGACTTTGCCATGGATGGCACCTGAGCTTCTTAGTGGGAAAAGCAATATGGTATCGGAGAAGATTGATGTGTACTCATTCGGAGTAGTTATGTGGGAGTTGCTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGTATCGTGAACAACAGTTTACGTCCTCAAATCCCATCATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCATCTGATCCTGCAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGTTAAGGAGTATGGCTGCTTCAATGAATGTGAAATAG 3354 0.4341 MCNKGFQCLNECESEVDQRQEFFVMDSPIRSPAAGSGSGEDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVCRDISYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDVADFRRLQQGEFPMISPVEDIHVAGEQFFNPMSVESGIHSHRSGDLSMPPYNMHHLSIQHPQPVGPRYTEMDSPWNPAYYSPRHHGLHDSRSLVEFPSSPSGRYRMPFPELPDKCIDRGPEDYARHHVNHHPLYDNQQQYADNVLWVPTGAAHSEKTGFPANILHGSHVVDGNNICEQCRMGFQRGQPHLEHSNISNGLLPVANPCGECPLPNRDAFPMNVDTKLHPAMYPNEPNGDHRSVYNDTQNHERGWGLQHPTTARVEESRGHLSVSGRVGDVPVANIPLGHGSVTDGHALSSNYLHQPVGPELGTELFPDQTLTASPHVQIAPLEECNVRYGNPSPYGVDSNYAVPRGHPSGLWRNTTIPVHLGPSHEANTSPPQVNGMINAALVRGEGSPGFYIGPDTQNQWVDSSQKLTGHDCKAIPEYSHAHALQLNPTLLGPENQHPVTVDTIHPPQDVSTGTCLEPLQVPISSYNMVHNQEVLRNDTSLATAKTFESNTLLGEGIVVKIEDKVKGPDTQTVSYSEQNKVAENACLAAASVDSNNSKSKPEGDCRHVEKLADEDHSVPQDYKHLGNQLSLLPELIASVKRDALEVVEEVKTAAKDDPANSHNQNLDAKEKTINEVEPANANGDLELNSESDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDSSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGVVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESCWASDPAERPSFSEISKKLRSMAASMNVK* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2463 1117 CDD PB1_UP2 48 144 - -
Vra7g2463 1117 ProSiteProfiles Protein kinase domain profile. 844 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2463 1117 SMART serkin_6 844 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2463 1117 Gene3D Phosphorylase Kinase; domain 1 830 929 - -
Vra7g2463 1117 Gene3D Transferase(Phosphotransferase) domain 1 930 1117 - -
Vra7g2463 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 969 981 IPR008271 GO:0004672|GO:0006468
Vra7g2463 1117 SMART PB1_new 59 144 IPR000270 GO:0005515
Vra7g2463 1117 SUPERFAMILY CAD & PB1 domains 61 151 - -
Vra7g2463 1117 PANTHER - 24 1117 - -
Vra7g2463 1117 SUPERFAMILY Protein kinase-like (PK-like) 836 1105 IPR011009 -
Vra7g2463 1117 ProSitePatterns Protein kinases ATP-binding region signature. 850 871 IPR017441 GO:0005524
Vra7g2463 1117 Pfam PB1 domain 60 145 IPR000270 GO:0005515
Vra7g2463 1117 PRINTS Tyrosine kinase catalytic domain signature 926 939 IPR001245 GO:0004672|GO:0006468
Vra7g2463 1117 PRINTS Tyrosine kinase catalytic domain signature 963 981 IPR001245 GO:0004672|GO:0006468
Vra7g2463 1117 PRINTS Tyrosine kinase catalytic domain signature 1034 1056 IPR001245 GO:0004672|GO:0006468
Vra7g2463 1117 PRINTS Tyrosine kinase catalytic domain signature 1078 1100 IPR001245 GO:0004672|GO:0006468
Vra7g2463 1117 CDD STKc_MAP3K-like 850 1107 - -
Vra7g2463 1117 Pfam Protein tyrosine and serine/threonine kinase 845 1107 IPR001245 GO:0004672|GO:0006468
Vra7g2463 1117 Gene3D - 63 147 - -
Vra7g2463 1117 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 1117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2463 Vra-Chr7 44899718 44906534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2463 40 1117 MAP Kinase Kinase Kinase AT5G57610 54.025 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra7g2463 PK_Tyr_Ser-Thr 5.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2463 - - gmx:100779077 1888.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2463 7 44899718 44906534 Vra7g2463 7 44899718 44906534 ECH
Vra7g2463 7 44899718 44906534 Vra5g0402 5 4171133 4178897 PCT