Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2458 ATGGGGTTTGAAAAAAAAATTGGCAAGTATCAGCTTGTTAGGACCATTGGAGAAGGTAGCTTCTCTAAGGTTAAGCTGGCTGTCAATGGCACCAATGGTCAGAAGGTTGCGGTCAAAGTCATTGATAAGCATATGATCTTAGAAAACAATCTTAAGACTCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGCATTCACGAGGTTATTGGCACAAAAACGAAGATATACATCGTGATGGAATATGTATCAGGAGGACAACTACTAGACAAGTTGTCTTATGGAGAGAAGTTGAATGAACGTGAGGCAAGAAAACTGTTCCAGCAACTCATTGATGCCCTGGACTACTGCCATAACAAAGGGGTCTATCATCGAGATCTCAAGCCAGAAAACCTGCTTCTTGACAGCATGGGAAATCTCAAAGTGTCTGACTTTGGATTAAGTGCATTACAAAAGTGTAATGATGTCTTGACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTTTTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAATTACTTGCAGGCTATTTACCATTTACCGACCAGAACTTGATGAACTTATATGGAAAGATATGGAAGTCAGAATATAAATGCCCCACATGGTTTACTCGGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCGCGTCCTGCTAAGCGGATAACTATATCAGATATCATTGAAGATCCGTGGTTTCAAAAAGATTACAAGCCTGTTTTTGCATCTGAATTTGATCAGAACATTAACTCGGAGGATGTTGATGTTGCTTTCAATTCAATTGAGGAAAATGTCAGAGAGACAACGGTATCTAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTCGGGATCTTGATCTATCTGGTCTTTTTGTAGAACAGGATGAAAAAAAGCAGACGAAAAGGATGGGATCCAAACACACTATCAATGAAACGATAGAAAAAATAGAAGCTGCTGCAACAGATGCAAGACTGTCAGTAGAGAAAATTAGCAACTTTAAGATAAAAATGCAACCGAAACGGACAATGGCCATGACCAGTTTCAGATCATACTTATCAGCTCAGGTGATTGAAGTTGCTCCAACTCACTGTGTTGTAGAAATATCAAAATCTACTGAAGATATAAGAACGTATAACAAATTTTGTGAAAGTTTATCAAATCTGCTGAAGCAAAAGCCTGGTGTGCCATCACAAAGCGAAGATTCTGTAGATCAATGTGCCTCTGATAGAAAAAAACACGACGCTGAATGCTATGAAGAGCCAAAAAGGGAATATGTCAAACTTTTTCGTGGCTACGAATCTTCTTGA 1407 0.3923 MGFEKKIGKYQLVRTIGEGSFSKVKLAVNGTNGQKVAVKVIDKHMILENNLKTQVKREIRTMKLLHHPNIVSIHEVIGTKTKIYIVMEYVSGGQLLDKLSYGEKLNEREARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSMGNLKVSDFGLSALQKCNDVLTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFTDQNLMNLYGKIWKSEYKCPTWFTRSQKKLIAKILEPRPAKRITISDIIEDPWFQKDYKPVFASEFDQNINSEDVDVAFNSIEENVRETTVSKSSSFINAFQLIAMSRDLDLSGLFVEQDEKKQTKRMGSKHTINETIEKIEAAATDARLSVEKISNFKIKMQPKRTMAMTSFRSYLSAQVIEVAPTHCVVEISKSTEDIRTYNKFCESLSNLLKQKPGVPSQSEDSVDQCASDRKKHDAECYEEPKREYVKLFRGYESS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2458 468 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Vra7g2458 468 MobiDBLite consensus disorder prediction 424 447 - -
Vra7g2458 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vra7g2458 468 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2458 468 SUPERFAMILY Protein kinase-like (PK-like) 7 275 IPR011009 -
Vra7g2458 468 Gene3D Transferase(Phosphotransferase) domain 1 90 291 - -
Vra7g2458 468 Pfam NAF domain 304 362 IPR004041 GO:0007165
Vra7g2458 468 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Vra7g2458 468 CDD CIPK_C 307 424 - -
Vra7g2458 468 PANTHER SERINE/THREONINE KINASE 6 427 - -
Vra7g2458 468 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2458 468 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2458 468 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 427 - -
Vra7g2458 468 Gene3D Kinase associated domain 1, KA1 301 424 - -
Vra7g2458 468 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2458 Vra-Chr7 44869910 44874021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2458 87 422 CBL-interacting serine-threonine protein kinases AT5G57630 60.355 3.35e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra7g2458 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2458 - - vun:114177464 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2458 7 44869910 44874021 Vra7g2458 7 44869910 44874021 ECH