Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2454 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGACCGGCTGGACTGTGCCGCCAAAGCCATGTGACTCCTGCAAGTTGGCTTCGGCTGCGCTTTTCTGCCGTCCCGATTCCGCTTTTCTCTGCATCGCCTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCATCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCACCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCCCTCTGCATCACGTGCGACTCCGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCCGCCGACTCCATCGTCAAGGCCTCCGCCGCCGCCTCCTTCGGCTTCATCGTCCCCTCAGACGACGCCACCGCTGCTTCCGACGTCTTCGCACCCGACGACCCCGACGCCGCCGCTTGGCTCATCCCTAACCCCAATTTCGGGTCAAAATTCATGGACGCCCCTGACATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAACAGCTCGGGAAACGACAGCGTCGTTCCAGTTCAAACCAAACCTTCCCTCGCTCCTTCTCTCATCAATAACCACCAACAATCAGAAAGCTGTTTCGACATCGATTTTTGCCGCACCAAACTCTCCTCCTTTAATTACCCATCCCAGTCTCTCAGCCAAAGCGTATCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTTGGTCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCAGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGATCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAATCGAAAGTTCGAGAAAACAATTCGATACGCATCACGGAAGGCTTACGCGGAAACCCGACCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCAGAAATTGACTCTGATGTGGAGCGTCTCTACAGCCCTGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTGGTACCGTCGTTTTAG 1119 0.5746 MGIERGGLKGFRTGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASAAASFGFIVPSDDATAASDVFAPDDPDAAAWLIPNPNFGSKFMDAPDIKSKEIFYSEMDPFLDFDYSNSFHNNSSGNDSVVPVQTKPSLAPSLINNHQQSESCFDIDFCRTKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAEIDSDVERLYSPGAASLMLDSPYGVVPSF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2454 372 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Vra7g2454 372 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Vra7g2454 372 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Vra7g2454 372 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Vra7g2454 372 CDD Bbox1_BBX-like 65 107 - -
Vra7g2454 372 Pfam CCT motif 300 342 IPR010402 GO:0005515
Vra7g2454 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 372 IPR045281 GO:0009909
Vra7g2454 372 CDD Bbox1_BBX-like 21 64 - -
Vra7g2454 372 SMART bboxneu5 65 107 IPR000315 GO:0008270
Vra7g2454 372 SMART bboxneu5 17 64 IPR000315 GO:0008270
Vra7g2454 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 372 - -
Vra7g2454 372 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2454 Vra-Chr7 44801316 44803093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2454 1 372 C2C2-CO-like Transcription Factor Family AT5G57660 53.247 9.30e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra7g2454 zf-B_box 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2454 - - gmx:100805693 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2454 7 44801316 44803093 Vra7g2454 7 44801316 44803093 ECH