Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2453 ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGAGGACAGCAAGGAGCTTCTCTCATGGGCAGTAAGAGTTCTGGCCAATCCAAATGATACCATTGTGGCTGTGCATGTTCTTGTTACTGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAATCGCAACTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAACTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAACGCTGACTTTCTTCTTATTCGTGGCTCAAGAAACCAAACTAATAAAAATGGGAGTTCTAAAGGAATTGCCAGGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTATCTGTCGGAAGACGTGGTAAGGCAGATCAAAGTGTCAAACCAAATTCAACTCATTGTCAAGTAGATAACAGACAACCAAATTCAAGACGGTTTAAGAAGGAAAAGCAATGTGATAAGGGTGTCTCCCCTGTTCTGGAGGATTATATATCAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCCTTGGATTCTAAGATTAAGAGCCGATCCAAGATTAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACTTTTATAGAAGTGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAAATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAGGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCTACTTCATTGCATGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGGATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTAATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAGAACCTTCTCTTATGGGCAAAGCCTCTGATGGAATCAGGGAACATTGTTGATCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAGCAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTGGAGCTGCTAACCAGTGGAAAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTGTGA 1821 0.4311 MVLPSPAKILIGLSLDPEDSKELLSWAVRVLANPNDTIVAVHVLVTADKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKNGSSKGIARYCFEHAHEGCTMVSVGRRGKADQSVKPNSTHCQVDNRQPNSRRFKKEKQCDKGVSPVLEDYISGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNFNFYRSEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIVDLADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGKDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2453 606 Pfam Universal stress protein family 8 141 IPR006016 -
Vra7g2453 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 140 - -
Vra7g2453 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Vra7g2453 606 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2453 606 Pfam Protein kinase domain 296 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2453 606 Gene3D HUPs 4 152 IPR014729 -
Vra7g2453 606 SMART serkin_6 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2453 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vra7g2453 606 CDD USP_Like 8 140 - -
Vra7g2453 606 MobiDBLite consensus disorder prediction 154 182 - -
Vra7g2453 606 PANTHER OS08G0249100 PROTEIN 6 596 - -
Vra7g2453 606 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Vra7g2453 606 Gene3D Phosphorylase Kinase; domain 1 261 372 - -
Vra7g2453 606 SUPERFAMILY Protein kinase-like (PK-like) 270 563 IPR011009 -
Vra7g2453 606 Gene3D Transferase(Phosphotransferase) domain 1 374 577 - -
Vra7g2453 606 MobiDBLite consensus disorder prediction 156 170 - -
Vra7g2453 606 MobiDBLite consensus disorder prediction 208 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2453 Vra-Chr7 44781806 44785439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2453 284 602 Trihelix Transcription Factor Family AT1G70460 40.356 4.02e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra7g2453 PK_Tyr_Ser-Thr 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2453 - - ccaj:109809416 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2453 7 44781806 44785439 Vra7g2453 7 44781806 44785439 ECH