Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2452 ATGGGATCCTCATTCAGTTGCTGTGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGCGTGGTTAACAATTCATGGAGAATATTCACGTACAAGGAGCTGCATGCGGCTACCAACGGATTCAGTGATGATAACAAGCTTGGAGAAGGTGGTTTTGGAAGCGTGTACTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTAAAGAAACTGAAAGCAATGAACTCGAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTTCTCGGGAGGGTTAGGCACAAAAACTTGCTGGGTCTCAGGGGCTATTGTGTTGGGGATGATCAACGCCTCATAGTTTACGATTACATGCCAAATCTCAGCCTCTTATCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGCAACTCAACTGGCAAAGGAGAATGAACATTGCAATAGGCTCTGCAGAAGGGCTTCTGTACTTGCACAGTGAGGTGACACCACACATCATACACAGGGATGTCAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAACTAATCCCAGAAGGAGTTAGCCATATGACTACACGTGTGAAGGGTACATTGGGATACTTGGCACCTGAATATGCCATGTGGGGGAAGGTTTCGGAAAGTTGTGATGTGTATAGCTTTGGAATTCTGCTGTTGGAACTTGTGAGTGGAAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAAGCAAAGGAAAGTACAGGGAACTGGTTGATCCAAAACTGAGGGGAAACTTTGATGAAAACGAAGTTAAACAAGCAATCAATGTGGCTGCTCTTTGCGTGCAGAATGAGCCTGAAAAACGACCCAACATGAAGCGAGTGGTTAACCTTCTTAAAGGGCAAGAATCTGAAGAGAAGAAAGTGAGTGTGACGAGGATAGACAGTATCAAGTACACTGAAGAATTATTGGCACTTGATGATGAGCCCAGTGATGAAGAACTTGATGATGCAACTGCTAGTTATGGTGTTTTCAGTGCCATTGAAGTCCAAAACATGAAGGATCCATATAACCGTCCTCAATTCAAGAAAATCGGTTAA 1143 0.4471 MGSSFSCCGSEKVEEVPTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVQLNWQRRMNIAIGSAEGLLYLHSEVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVSGRKPIEKLPGGLKRTITEWAEPLISKGKYRELVDPKLRGNFDENEVKQAINVAALCVQNEPEKRPNMKRVVNLLKGQESEEKKVSVTRIDSIKYTEELLALDDEPSDEELDDATASYGVFSAIEVQNMKDPYNRPQFKKIG* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2452 380 ProSiteProfiles Protein kinase domain profile. 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2452 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vra7g2452 380 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vra7g2452 380 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2452 380 PANTHER OS01G0750732 PROTEIN 1 374 - -
Vra7g2452 380 CDD STKc_IRAK 48 315 - -
Vra7g2452 380 SUPERFAMILY Protein kinase-like (PK-like) 26 315 IPR011009 -
Vra7g2452 380 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Vra7g2452 380 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Vra7g2452 380 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 374 - -
Vra7g2452 380 Gene3D Transferase(Phosphotransferase) domain 1 118 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2452 Vra-Chr7 44777054 44778521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2452 1 342 Trihelix Transcription Factor Family AT1G70460 44.290 1.90e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra7g2452 PK_Tyr_Ser-Thr 7.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2452 - - gmx:100783365 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2452 7 44777054 44778521 Vra7g2452 7 44777054 44778521 ECH