Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2449 ATGTGGAAGTGCTTCTCGTCCCTTTTCTCTCTGTTTTTGATTTTTTTGTTTGTGCTTCAACAAGCACCAACGGGGAATGCCTCAAATGCATCATATGAAGAGATCAAGTTGAGAGTAGGGGTGCCCAGGAAAAATGGTTTCCAACAATTTGTGCATGTAATTGGGGAAACTTCTCAAGAAAATTACAACATATCAGGATATTGCATGGAGGTTTTCAATGCCGTCATAACCCATTTACCCTTCAAAGTTTCTCTACATGTTGAACCTCATGATATTGACTCAAGTGAGGGTTCTGGATACGATGCTCTTCTAAAACTAATCCCGTCAAAGTATGATGTCGTGGTCGGAGATATAACCATCCTAGCCAACCGTTCAAACTATGTAGATTTCACAGTGCCATATACTGGATCGGGAGTTAAAATGGTAGTACCTGTTCGTCATGGGAGGGATAAAAACATGTGGACTTTTACCAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTAAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGCTTTGCCCTGCAACCATCTTGTGGTTTCCATTATCACAAGCCATTCTTCCTGAAAGACAAGTAGTAGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTTATGCAAAGTTACACTGCGAACTTGACTTCTATATTGACCTTGGATCAACTACAACCAAGCTTTCTCAACTTGAATGACTTAAGAAAAGGGGGCTATTACGTTGGATACCAAACGGGATCTTTCGTTCACGACGTGTTGGTTAAGCAATTTAAGTTTGACCCTTCTAAACTGAAGCCATACAACACAAGTTCCGATTATCACCATGCTCTAAAGCTTGGGAGCCAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAAATCTACCTTCAAGAATACGGATCCAATTACATTATGTCTGGCCCCAAATATAGAAATGCTGGGTTTGGTTTTGCACTGCCTCTAAACTCGAATCTCACGGCGTACTTTTCGAGAGCCATCTTGAATGTGACTGAAAGTGATTTGATGAATGAAATTGAAGAAAAATATTTTGGGAAGAATGAAATTGGTGAACAAAACTCGTCTGAGGAAGCATCTTCTGCTCCTCTAAGTCTCACCTTTCATAGCTTTGAGGGGCTGTTTTTTATTACAGGAATTTCAACATTTTTTGCACTATTGATATCAGAAAGTGTTATATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCGAAGGTATTTGTCCTTCGTGGCACCTACCACGGAAATACGCGTTCATCCAACTCATGATTCAACTCACGGTATAGAAGTCGTTTAG 1431 0.406 MWKCFSSLFSLFLIFLFVLQQAPTGNASNASYEEIKLRVGVPRKNGFQQFVHVIGETSQENYNISGYCMEVFNAVITHLPFKVSLHVEPHDIDSSEGSGYDALLKLIPSKYDVVVGDITILANRSNYVDFTVPYTGSGVKMVVPVRHGRDKNMWTFTKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQKKLCPATILWFPLSQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNLNDLRKGGYYVGYQTGSFVHDVLVKQFKFDPSKLKPYNTSSDYHHALKLGSQNGGVAAIFDEVPYLKIYLQEYGSNYIMSGPKYRNAGFGFALPLNSNLTAYFSRAILNVTESDLMNEIEEKYFGKNEIGEQNSSEEASSAPLSLTFHSFEGLFFITGISTFFALLISESVIWQKPILMAKALSRRYLSFVAPTTEIRVHPTHDSTHGIEVV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2449 476 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 472 - -
Vra7g2449 476 Pfam Ligand-gated ion channel 391 423 IPR001320 GO:0015276|GO:0016020
Vra7g2449 476 Gene3D - 154 293 - -
Vra7g2449 476 Pfam Bacterial extracellular solute-binding proteins, family 3 60 390 IPR001638 -
Vra7g2449 476 Gene3D - 33 153 - -
Vra7g2449 476 Gene3D - 335 395 - -
Vra7g2449 476 SUPERFAMILY Periplasmic binding protein-like II 8 391 - -
Vra7g2449 476 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 472 - -
Vra7g2449 476 SMART GluR_14 36 390 IPR001320 GO:0015276|GO:0016020
Vra7g2449 476 CDD GluR_Plant 36 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2449 Vra-Chr7 44717845 44719912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2449 36 431 Ion Channels AT5G11210 38.557 3.52e-89 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2449 K05387 - gmx:100807817 692.575