LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g2442	ATGCTATCAAGATCTTGCTTGGGGCTGTTAAATTTGGTATCGGTGGATGATTACCGAGCGCTGGCTCGGGTTCCGCGGGTGGTGACCACGGTTGCTGGAGACGTGGCGGAGTTGGACATGAACGCCATGGAGAATTCTGGATTGGACGAGGTGGTTTCGCCGGTGCCGCGCGAGAGGCGGGTCGTGGTGGCGAATCAGTTACCGATACGCGCATTTCGTGAGGGGAAGAAATGGAGGTTCGAGTGGGACAGAGACAGCCTGGTCCTTCAGCTTAAAGATGGCTTCCCTTCGGATGTGGAAGTGTTGTACGTTGGTTCACTGAAAGCAGAGATCGAAGCGAGCGAACAAGAAGAAGTGGCTCAGTTGCTCCTTGAAAGGTTCCGCTGCGTCCCAACGTTTCTACCCCCAGAGGTTCACAACAAATTCTACCATGGTTTCTGCAAGCATTACCTGTGGCCTCTCTTCCACTACATGCTACCCATGTCGCCGAGTCAGGGCGCGCACTTCGACCGCGACCAGTGGAAGGCCTACGTCCTGGCCAACAAGATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCAGACGAGGATTTTGTCTGGGTCCACGATTACCACCTCATGATCCTCCCCACTTTTCTCCGGAAGCGGTTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCGTCCTCGGAGATATACAGGACTTTGCCGGTGCGCGAGGACATTCTCCGGGCGTTTCTCAACTGCGATTTGGTCGGCTTCCACACGTTCGACTACGCGCGACACTTTTTGTCGTGTTGCAGCAGAATGTTGGGGCTGGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTACGGTAGGACCGTGACGATTAAGATCCTCCCCGCGGGGATCCACATGGGCCTCTTGGAGTCGGTGTTGTCGTTACCGCAGACCGCAAAAAGGGTGAAAGAATTGAAGAAGGAGTACGAGGGGAAGGTTGTGATATTGGGCGTGGATGACATGGACTTGTTCAAGGGGATTAGTTTGAAGTTCTTGGCTTTGGGGAAGCTTTTGGAAGTTGACGAAGGTTTGCGGGGTCGTGTTGTGTTGGTTCAGATTCTGAACGCTGCCAGGAGCAGAGGGAAGGATATTCAGGACGTGAAGAGCGAGAGCGAGGCTATTGCGAGGGATATCAATGAGAAGTATTCGCAACCGGGGTACAAGCCTATTGTTTTTGTTAATGGACCAATTTCCACGCAGGAGAAGGCAGCGTATTGCTCCATTGCCGAGTGTTGCGTCGTGAATGCTGTGAGGGACGGGATGAATTTGGTGCCTTACGAGTACACTGTGTGTAGGCAGGGGACTGTTGCTTTGGATAAGGCTCTTGGCGTTGAAGGCGAGGATAAGAAATCCCTTAAACAGAGCGTTATAATTGTGTCTGAGTTCATAGGGTGTTCCCCTTCTCTCAGTGGAGCCATCAGGGTTAATCCGTGGAACATTGATGAAGTCGCTGAGGCAATGAATTCGGCTGTAACAATGTCGGAGGCAGAGAAGCATTTGCGCCATGAGAAGCATTACAAGTACATTAGCTCTCATGATGTGGCTTACTGGGCAAGGAGTTTTGATCAGGATTTAGATAGAGCATGTAGGGAGCATTATTCCAAGAGGTACTGGGGTGTTGGGTTCGGATTGGGGTTTAGAATTGTTGCACTGGATCCTACCTTTAGGAAGCTCTCTGTAGATCACATTGCCTCTGCGTATAGAGATACACACAGTCGGTTGATCCTTTTGGACTACGATGGCACCATGATGCCACAGGCCTCAATAAACAAAACTCCAAGCGTGGAAGTTATTTCTGTCTTGAATTACTTATGCAGTGACCCGGAGAATATGGTGTTCATAGTGAGCGGCAGGGATAAGGATTGCTTGAGCAAATGGTTTTCTCCCTGTGATAAATTGGGTCTCTCTGCTGAGCACGGTTACTTCACTAGGTGGAGTATGAATTCTCCTTGGGAGACTTGCGGATTGGCAATCGATTGTGAATGGAAAATGATTGCAGAACCTGTGATGGCGCTTTATACAGAAGCAACGGATGGTTCCTTCATTGAACACAAGGAAAGCGCAATGGTGTGGCATCATCAAGAAGCAGATCCATATTTTGGATCATGCCAAGCAAAAGAGCTTCTTGATCACTTGGAGAGTGTGCTGGCCAATGAGTCAGTGGTGGTTACAAGGGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAGGGTAAAGTGGTTGAAGACATTATTTCAACCATGCGAAGTAAGGGAAAGTCACCTGATTTTCTATTATGCATAGGAGATGATCGTTCAGATGAAGATATGTTCGAAAGTATTGCTCGTTCAGTGTCTAATCCAGCTCTGCCAACCATAGCCAAAGTGTTTGCATGCACTGTTGGACAAAAACCAAGTATGGCAAAATACTATTTGGATGATACTAACGAAGTAATCAATTTGCTTGAAGGACTTGCGTGCCCATCAACACCATCCTCATCCACAATAACTTCTCAGGCATTGTGA	2568	0.4907	MLSRSCLGLLNLVSVDDYRALARVPRVVTTVAGDVAELDMNAMENSGLDEVVSPVPRERRVVVANQLPIRAFREGKKWRFEWDRDSLVLQLKDGFPSDVEVLYVGSLKAEIEASEQEEVAQLLLERFRCVPTFLPPEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGAHFDRDQWKAYVLANKIFADKVTEVINPDEDFVWVHDYHLMILPTFLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREDILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPAGIHMGLLESVLSLPQTAKRVKELKKEYEGKVVILGVDDMDLFKGISLKFLALGKLLEVDEGLRGRVVLVQILNAARSRGKDIQDVKSESEAIARDINEKYSQPGYKPIVFVNGPISTQEKAAYCSIAECCVVNAVRDGMNLVPYEYTVCRQGTVALDKALGVEGEDKKSLKQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAVTMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGFGLGFRIVALDPTFRKLSVDHIASAYRDTHSRLILLDYDGTMMPQASINKTPSVEVISVLNYLCSDPENMVFIVSGRDKDCLSKWFSPCDKLGLSAEHGYFTRWSMNSPWETCGLAIDCEWKMIAEPVMALYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANESVVVTRGQHIVEVKPQGVSKGKVVEDIISTMRSKGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTIAKVFACTVGQKPSMAKYYLDDTNEVINLLEGLACPSTPSSSTITSQAL*	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g2442	855	Gene3D	-	721	850	IPR023214	-
	Vra7g2442	855	Gene3D	-	591	702	IPR023214	-
	Vra7g2442	855	Gene3D	Glycogen Phosphorylase B;	310	529	-	-
	Vra7g2442	855	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	845	IPR001830	GO:0003824\|GO:0005992
	Vra7g2442	855	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	593	797	IPR006379	-
	Vra7g2442	855	Gene3D	Glycogen Phosphorylase B;	55	309	-	-
	Vra7g2442	855	SUPERFAMILY	HAD-like	592	840	IPR036412	-
	Vra7g2442	855	Pfam	Glycosyltransferase family 20	59	545	IPR001830	GO:0003824\|GO:0005992
	Vra7g2442	855	CDD	HAD_TPP	593	834	-	-
	Vra7g2442	855	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	845	-	-
	Vra7g2442	855	Pfam	Trehalose-phosphatase	595	829	IPR003337	GO:0003824\|GO:0005992
	Vra7g2442	855	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	59	549	-	-
	Vra7g2442	855	CDD	GT20_TPS	59	544	IPR001830	GO:0003824\|GO:0005992
	Vra7g2442	855	TIGRFAM	T6PP: trehalose-phosphatase	591	839	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g2442	Vra-Chr7	44596516	44599950	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g2442	10	846	Trehalose Biosynthesis Gene Families	AT2G18700	67.972	0.0	1187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g2442	K16055		-	gmx:100810498	1592.02