Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2439 ATGCCTCCTCCCACGCACCACCCCCAACCCCAACCCCAACCAAAACCTAATCCCAACTTTCTTTCTCTCTTCCTCAAACCTATCATTATGCTTCTTCTCACCTCCCTCTTCTTCCTCTTCATTGGCTTCGCCGCCTTTCTCCTCCTCCACCTCTTCCTCCTTGGCGGTGCCTTCCACCGCCTTCGCTTCCGCCCCTCCGCCGCCGCTGCCTCCTCTTCCAACGGCCTCCTTCCTCGTGAAATCAACAAGCTTCCTCGCTTCCGCCTCTCCCACGGATCCCAAATGCTAGCCGACACCCACTGCGTTGTCTGTTTAGACGCCTTTCGCAGCGGCCAGTGGTGCCGGAAACTCGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACGTGCCGTACATCCGTGCGATTTAATGCCGGGCCTCCGGTACAAGACTCAGCACTAGGTTCTACTTTTGCCCAGTTTCGAGCCTGCGAAACTGACTCCAGTGTTGTCACCCCTTTATAG 540 0.5815 MPPPTHHPQPQPQPKPNPNFLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSAAAASSSNGLLPREINKLPRFRLSHGSQMLADTHCVVCLDAFRSGQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTSVRFNAGPPVQDSALGSTFAQFRACETDSSVVTPL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2439 179 PANTHER RING-H2 FINGER PROTEIN ATL56 7 154 - -
Vra7g2439 179 SMART ring_2 101 142 IPR001841 -
Vra7g2439 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 150 IPR013083 -
Vra7g2439 179 Pfam Ring finger domain 100 143 IPR001841 -
Vra7g2439 179 SUPERFAMILY RING/U-box 92 149 - -
Vra7g2439 179 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vra7g2439 179 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2439 Vra-Chr7 44570563 44573381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2439 15 172 C3H Transcription Factor Family AT2G18670 45.283 1.06e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2439 - - pvu:PHAVU_003G150700g 234.958