Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2438 ATGGGTGGAGGTGACGCCTTTGTGTCTCAACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCGCCTTTTCCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCATTGAAGGTCAGTCCGAGCATACTTCTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTCGAGAGCCCGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTACAGCAACTCTTCCACCTGCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTCTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTTCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTATGTAGAGCCAGCTTACTCCCTGAATTCTCTGTGGGCAACTCGTGTTCTCCCTATGTTCTTGTCCTTGAATCTGGGAGTGAGAGTTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGCCGTCGGAAGGTCTAGTTCGGTTATGACTTCAAATTCTCGTCTTGGATGCCATGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTGAGTGAAGCTCCTGATCCAACACTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGAAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGGGAGTAGTACTACCAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCTTATGTTATGGACGAAAGTTCCTCACTCCAAGTGCCCATACGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGTCTTTGATGCAACTATAGTTGAGGACGATGCTGCTAGTAGTGGGGCTGCAACTGATAGGACAACTTGTAATGAGAATAGTGCTGCAATTGGAAGAAATAGAAAGGAAAGTTTTTCAATATCAAAGATTTGGCTCAGGGGGAAGAAGGATAAGCCAAATGCTGTGGCAGATTCGTCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCGAAGTCCAGTGCTGTTGCTGCTTCGGTCAGTGCCGATGATGATTTGAAAGGAAAGAATTCTAAGTTTGATACAAGGAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGCGAGTTTGATTTCGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAACAAGGTTGTTCACTCCGCTTCCAACCTCTAA 1521 0.4583 MGGGDAFVSQPEQPPYFLSQPNSPFPPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSVGNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRLGCHGDSEFGSTRVDLKSGELLSEAPDPTLPNGVEKVVTVKLGKFKSVDGGGDGGEGSSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAVFDATIVEDDAASSGAATDRTTCNENSAAIGRNRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSAVAASVSADDDLKGKNSKFDTRSTISEMDIGKWENGGGSEFDFDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2438 506 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g2438 506 MobiDBLite consensus disorder prediction 312 335 - -
Vra7g2438 506 SUPERFAMILY RING/U-box 107 177 - -
Vra7g2438 506 Pfam Ring finger domain 127 170 IPR001841 -
Vra7g2438 506 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 11 406 - -
Vra7g2438 506 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vra7g2438 506 CDD RING-H2_PA-TM-RING 127 170 - -
Vra7g2438 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Vra7g2438 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 406 - -
Vra7g2438 506 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2438 Vra-Chr7 44560047 44562053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2438 35 506 C3H Transcription Factor Family AT2G18650 45.603 4.36e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2438 - - gmx:100797283 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2438 7 44560047 44562053 Vra7g2438 7 44560047 44562053 ECH