Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2418 ATGCTTTTCTCTCCCTCCTCTTCCACTCCCACTTCCACCCTCATGGCTCTGCTCTTCCTCTTTCTCCTTTTCTTCCTCTCTCTTTCCTCCGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTCAATGATCCTCACGGTGTCTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCTGATGACCTTGTCATAGGCCTAGGTGCGCCTAGCCAATCTCTCTCTGGCACTTTCTCTCCGGCAATTGGAAATCTAACAAATCTTCGACAAGTATTGCTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCGCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACAGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACCTGTCTTATAACAATCTCAGTGGACCATTACCTAAGTTCCCAGCCAGGTCATTCAATATTGTGGGCAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCGACCCTCATACCAATTTCCTTCTCGCAAGTGTCATCAGAAGGAAAACACAAATCCAAAAAACTAGCAATAGCACTTGGGACCAGTCTTAGTTGTGCTTCTGTCATCCTCCTGCTTGTTGCGCTATTTTGGTATAGAAAGAAACGACAGCTCGGAGCCATCCTATATATCAGTGATTACAAGGAAGAAGGAGTTCTTAGCTTGGGAAATCTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATCGGGGGAAGTTTGGAGATGGCACGATGGTAGCAGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCTGGCGAATTGCAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGCTATTGTGCTACTCCTAATGAAAAACTTTTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACTAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTACACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCAGCCAATGTGCTTCTGGATGACTATTATGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCACGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCTGAGTACCTCTCGACCGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTTTTGTTAGAGCTCATAACCGGGATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAAGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGTCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTAGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCACGACATGAACCCGAGCCATAGCAACAATAGTTCATCCCTCCCTACCTCTGCTTCGAAACATGATGATGTTCATGACCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1935 0.4532 MLFSPSSSTPTSTLMALLFLFLLFFLSLSSASQPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDDLVIGLGAPSQSLSGTFSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKKLAIALGTSLSCASVILLLVALFWYRKKRQLGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYYEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTVHRPKMSEVVRMLEGDGLAEKWASSHNYGNHDMNPSHSNNSSSLPTSASKHDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2418 644 Gene3D Phosphorylase Kinase; domain 1 274 380 - -
Vra7g2418 644 MobiDBLite consensus disorder prediction 587 608 - -
Vra7g2418 644 SUPERFAMILY Protein kinase-like (PK-like) 287 574 IPR011009 -
Vra7g2418 644 Gene3D Ribonuclease Inhibitor 35 217 IPR032675 -
Vra7g2418 644 SUPERFAMILY L domain-like 35 204 - -
Vra7g2418 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 644 - -
Vra7g2418 644 Gene3D Transferase(Phosphotransferase) domain 1 381 591 - -
Vra7g2418 644 SMART serkin_6 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2418 644 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vra7g2418 644 MobiDBLite consensus disorder prediction 609 624 - -
Vra7g2418 644 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vra7g2418 644 SMART LRR_typ_2 101 124 IPR003591 -
Vra7g2418 644 SMART LRR_typ_2 149 172 IPR003591 -
Vra7g2418 644 SMART LRR_typ_2 125 148 IPR003591 -
Vra7g2418 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vra7g2418 644 Pfam Protein kinase domain 305 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2418 644 MobiDBLite consensus disorder prediction 586 644 - -
Vra7g2418 644 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 644 - -
Vra7g2418 644 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2418 644 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2418 Vra-Chr7 44330029 44335459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2418 18 644 Receptor kinase-like Gene Family AT5G16000 63.495 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra7g2418 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2418 - - gmx:100797186 1118.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2418 7 44330029 44335459 Vra7g2418 7 44330029 44335459 ECH