Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2416 ATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAATGCAACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGTTTACCTTGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAAGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGGGGGATTTCTAAATACAGAGGCGTTGCAAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTCGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAACTTCGATCTCAGCCGTTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAGTGACATGAATAACAATTGCACCAGCAGCAGCCTCACCCCAAACCCTGATCAAGAGCAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCACTGAATACTGTTGTAGAAGAAGCGACATCGGTGACACATCAGCCACGTGCAGCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCTGATCACATTCAAACGTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCCAGAGTTGA 1107 0.4544 MAKRSHSQLRTQKNNATNIANNLNATNTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNETQNKKGRQVYLGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLSDMNNNCTSSSLTPNPDQEQEQELSFLHNQDSLNTVVEEATSVTHQPRAAGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFQS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2416 368 SUPERFAMILY DNA-binding domain 50 119 IPR016177 GO:0003677
Vra7g2416 368 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 352 - -
Vra7g2416 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 352 - -
Vra7g2416 368 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 Pfam AP2 domain 51 109 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Vra7g2416 368 Gene3D AP2/ERF domain 51 119 IPR036955 GO:0003700|GO:0006355
Vra7g2416 368 ProSiteProfiles AP2/ERF domain profile. 51 117 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Vra7g2416 368 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 SMART rav1_2 51 123 IPR001471 GO:0003700|GO:0006355
Vra7g2416 368 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2416 Vra-Chr7 44300265 44302974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2416 47 215 AP2-EREBP Transcription Factor Family AT5G57390 73.373 4.04e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra7g2416 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2416 K09285 - gmx:100793339 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2416 7 44300265 44302974 Vra7g2416 7 44300265 44302974 ECH
Vra7g2416 7 44300265 44302974 Vra5g0372 5 3836386 3839381 PCT