Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2406 ATGGGTTTGTTTAGGTTAGCAGTGTTCCTATTTTTCTGTCTGGACACTGTTCATTCTACAGTTCTTGGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTAGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTTGGGTGTGAGATGCAACAATGCAAGTGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTGGGAGGCACTATTTCCCCTGCCCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGTCGGATTCCAAAAGAAATAGGCCATTTGGTTCAGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTTGAGGATCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGGACTACCTTGACTTAGGAAGCAATCATCTTGAGGGAGAGATCCCTTCTTCACTCTTCTGCAATAGGACTTCACTGGGTTATGTAGACCTCTCTAACAATTCCTTAGGTGGCCAAATCCCCTTGAACAAAGGGTGCATCCTTAAAGAACTCAAGTTCCTATTACTTTGGTCTAACAAGCTTGTAGGAAAAGTTCCTTTAGCTCTTTCAAACTCCACCAAGCTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAACTTCCTTCTGAGATTGTAAGTAATTGGCCACAACTACAATTCCTCTACTTGTCATACAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTTTTTGCCTCCTTGGTGAATTTATCGCACTTTCAAGAACTTGAATTGGCGGGAAATAATCTTGGTGGAAAGCTGCCTCACAGTATTGGTGATCTTCCTACCAGCCTGCAACAACTCCACCTAGAAAAGAATCTCATATATGGCTCTATACCTCCTCATATTTCCAACCTTGTCAACCTGAATTTCTTGAAGTTGTCTAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCGGCCATATGAATAGGCTAGAAAGAATTTATTTATCAAACAATTCACTATCTGGTGAGATTCCTTCAACCCTTGGTGGCATTCAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGCCCAATACCAAACAGTTTTGCAAATCTCACCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGGACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTATCTCACAACAATATAACCGGGTTGATTCCTGAAGAAGTTGCAGCCTTGAGTAGCTTGAAACTATACCTGAATTTGTCAAACAATAACTTGCATGGGTCTTTGCCATTAAAGCTCAGCAAAATGGACATGGTTCTAGCTATTGATTTATCCATGAATAACCTCTCTGGCAGCATACCACCACAGCTGGAAAGTTGTATAGCACTGGAGTACCTCAACCTCTCTGGTAACTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCGATTGCTTTATATTAGAGCACTTGATGTGTCTTCAAATCAGTTGACTGGGACAATACCACAGTCCATGCAGTTGTCTCCCTCTCTGAAGGAACTTAATTTCTCTTTCAACAGATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAATCTTACCATAGACTCTTTCCTGGGAAACGGTGGTCTCTGCGGCCCGTTCAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCTGTGTCACTATTTGGCACCCCTCTCCTATGCATACTTTTTAGGTACCCAATGGTAATGAAGTCAAGAGTGAAAAAACGATTTGCAATTGCTAGCAGAGGTGATTTTGAGGATTTAGAAGAAGGAGCAAAAGAGGTCAAGTACCCAAGAATCACATATGAACAACTTAAAGAAGCCACTGGAGGCTTCAGTGCTACAAGCTTAATTGGTTCAGGCCGGTTTGGGCAGGTCTACGAAGGAATGCTCCAAGATAACACAAGAGTAGCTGTGAAGGTGTTGGACACAACACACGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGCCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATCTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATGGTAGTCTCGAGAGTCACCTATATCCAAGCCAAAGATTGAATGTGGTTCAACTAGTAAGAATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGCGATCTTAAGCCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTCACTGATTTTGGAATTTCAAGGCTTGTACAAATTGATGAAAACACATCCACCAGTACTTCATCTTTCAGTTCAACACATGCTTTGTTATGTGGGTCGGTCGGTTACATAGCTCCCGAGTACGGAATGGGAAAAGCTGCTTCAAGTGAGGGTGATGTTTACAGTTTTGGAGTGCTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGAAGTGCTCAGCCATGAAGGCTCAAGCTTGAGTGAGTGGCTTAAGAAACTATACACACAACCACACCACCTTCAAAACTTTGTTCAACAAACACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAATCCTCACAACAAAGAGTGGAAAGATGTTATTCTGGAACTCATTGAGCTGGGGCTAATCTGCACTCAGCACAACCCTTCAACAAGACCAAACATGCACGACATAGCACAAGAGATGGAGAGGTTAAAGGACTACCTCACCAAGTCAACCCTCACACGTCATTCAAGTCAATCCCAACATTAA 2922 0.4199 MGLFRLAVFLFFCLDTVHSTVLGKENAGIVNGKKSLISFMSGIVSDPQNALDSWKSPGVHVCDWLGVRCNNASDMIVEVDLSGRSLGGTISPALANISSLQILDLSGNFLVGRIPKEIGHLVQLRQLSLSGNFLEDHIPSEFGSLHNLDYLDLGSNHLEGEIPSSLFCNRTSLGYVDLSNNSLGGQIPLNKGCILKELKFLLLWSNKLVGKVPLALSNSTKLKWLDLGLNMLSGELPSEIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHSIGDLPTSLQQLHLEKNLIYGSIPPHISNLVNLNFLKLSSNLINGSIPPSLGHMNRLERIYLSNNSLSGEIPSTLGGIQHLGLLDLSRNKLSGPIPNSFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNNITGLIPEEVAALSSLKLYLNLSNNNLHGSLPLKLSKMDMVLAIDLSMNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGRLLYIRALDVSSNQLTGTIPQSMQLSPSLKELNFSFNRFSGKVSNKGAFSNLTIDSFLGNGGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPLLCILFRYPMVMKSRVKKRFAIASRGDFEDLEEGAKEVKYPRITYEQLKEATGGFSATSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLESHLYPSQRLNVVQLVRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLVQIDENTSTSTSSFSSTHALLCGSVGYIAPEYGMGKAASSEGDVYSFGVLVLEMVSGRRPTEVLSHEGSSLSEWLKKLYTQPHHLQNFVQQTLQRCYPFGLPNPHNKEWKDVILELIELGLICTQHNPSTRPNMHDIAQEMERLKDYLTKSTLTRHSSQSQH* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2406 973 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515
Vra7g2406 973 Pfam Leucine Rich Repeat 497 516 IPR001611 GO:0005515
Vra7g2406 973 Pfam Leucine Rich Repeat 423 441 IPR001611 GO:0005515
Vra7g2406 973 Pfam Leucine rich repeat 351 410 IPR001611 GO:0005515
Vra7g2406 973 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vra7g2406 973 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Vra7g2406 973 ProSiteProfiles Leucine-rich repeat profile. 423 444 IPR001611 GO:0005515
Vra7g2406 973 SUPERFAMILY L domain-like 330 581 - -
Vra7g2406 973 Gene3D Ribonuclease Inhibitor 31 194 IPR032675 -
Vra7g2406 973 SMART serkin_6 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2406 973 SMART LRR_typ_2 97 120 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 121 144 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 325 349 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 145 169 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 373 396 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 422 444 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 445 470 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 397 421 IPR003591 -
Vra7g2406 973 SMART LRR_typ_2 276 300 IPR003591 -
Vra7g2406 973 Gene3D Phosphorylase Kinase; domain 1 644 739 - -
Vra7g2406 973 Gene3D Ribonuclease Inhibitor 195 592 IPR032675 -
Vra7g2406 973 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Vra7g2406 973 SUPERFAMILY Protein kinase-like (PK-like) 647 952 IPR011009 -
Vra7g2406 973 ProSiteProfiles Protein kinase domain profile. 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2406 973 Pfam Protein tyrosine and serine/threonine kinase 669 950 IPR001245 GO:0004672|GO:0006468
Vra7g2406 973 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 22 956 - -
Vra7g2406 973 CDD STKc_IRAK 671 955 - -
Vra7g2406 973 SUPERFAMILY RNI-like 79 363 - -
Vra7g2406 973 PANTHER OS04G0122200 PROTEIN 22 956 - -
Vra7g2406 973 Gene3D Transferase(Phosphotransferase) domain 1 741 971 - -
Vra7g2406 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2406 Vra-Chr7 44193331 44196585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2406 34 971 Receptor kinase-like Gene Family AT5G20480 33.496 7.72e-160 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra7g2406 PK_Tyr_Ser-Thr 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2406 - - gmx:100792446 1648.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2406 7 44193331 44196585 Vra7g2406 7 44193331 44196585 ECH