Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2401 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATAGGAACGAACTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATATGCGGCGATGATGTGGGAGTGACGGTGGATGGAGATTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCGTGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTTAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAGCACGAATTCAACATCGATGACCAAATGAACAAGCATAATCACTCTGCCGAGGCCATGCTGCATGGGAAGATGAGCTACGGAAGAGGTCCAGAAGATGAGGAGAATTCTCAATTCCCAGCTGTTATTGCCGGTGGCCGTTCTCGCCCTGTTAGTGGAGAGTTGCCAATATCATCTCATTATGGGGAGCACCCTTCACTGCATAATCGTGTGCATCCTTATCCGGCATCTGATCCTACAGGAAATGGAAGATGGGATGAAACCAAAGATGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGACCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGAATGGTGATTGTCGCACGGCTTGTTATCCTTGCCTTCTTCCTCCGATATAGACTGATGAATCCTGTACATGATGCATTGGGGCTGTGGTTAACATCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAGTAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTCAGTACTGTGGATCCCATGAAGGAACCTCCACTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGAGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAAAAGGTTCCACAGGGAGGATGGATTATGCAGGATGGAACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGACACTGAAGGAAATGAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTAACGAATGCTCCTTTCATGCTGAATTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTAGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACTGGGTGTGTATTTAGGAGACAAGCTTTATATGGTTATAATCCTCCTAAGGGTGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGTAGATGGAGGCGAGGCTGCAACCCTAAGAGGACCAGATGATGATAAACAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCACGTGATCAGCTGCGGATACGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGCGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTATAAGGAAGGGAAGTTGAAGTGGCTTGAGCGATTTGCATATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTCGCCTACTGTGTCCTTCCTGCTGTCTGTTTGCTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCACCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCCGGAATTGACACCAACTTCACTGTTACATCAAAGGCAGCGGATGATGAAGAATTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGCGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTGTTCTTCTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCGATACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCATTCGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTAA 3102 0.4494 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGPEDEENSQFPAVIAGGRSRPVSGELPISSHYGEHPSLHNRVHPYPASDPTGNGRWDETKDDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSVRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGAKRPKMISCDCCPCFGKRKKVKYEGNGVDGGEAATLRGPDDDKQMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2401 1033 SUPERFAMILY Nucleotide-diphospho-sugar transferases 337 794 IPR029044 -
Vra7g2401 1033 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1033 - -
Vra7g2401 1033 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1033 - -
Vra7g2401 1033 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 469 615 IPR029044 -
Vra7g2401 1033 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Vra7g2401 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vra7g2401 1033 MobiDBLite consensus disorder prediction 154 196 - -
Vra7g2401 1033 Coils Coil 422 442 - -
Vra7g2401 1033 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Vra7g2401 1033 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vra7g2401 1033 SUPERFAMILY RING/U-box 21 109 - -
Vra7g2401 1033 Pfam Cellulose synthase 324 1027 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2401 Vra-Chr7 44151577 44156794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2401 1 1033 Cell Wall Biosynthesis AT5G17420 85.783 0.0 1834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2401 K10999 - gmx:100779834 2055.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2401 7 44151577 44156794 Vra7g2401 7 44151577 44156794 ECH
Vra7g2401 7 44151577 44156794 Vra2g1619 2 24251277 24256590 PCT
Vra2g1620 2 24260304 24265717 Vra7g2401 7 44151577 44156794 PCT