Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2399 ATGGCAGCAAAGGAAGGCAAAGCAATAGGCATAGACCTCGGCACGACCTACAGCTGCGTAGGCGTGTGGCAAAACGACCGCGTTGAGATCATCCCCAACGACCAAGGCAACCGAACCACACCCTCTTATGTGGCTTTCACCGACACCGAGAGGCTCATCGGAGACGCTGCAAAGAACCAAGTTGCTATGAATCCGCAGAACACAGTCTTCGATGCCAAGCGTCTAATTGGGCGCAGATTCTCCGACTCGTCGGTTCAGAACGACATGAAGCTGTGGCCGTTTAAGGTGGTGGCGGGCCCGGGTGACAAGCCCATGATCGTGGTCACGTACAAGGGTGAGGAGAAGAAGTTTTCTGCTGAAGAGATATCTTCCATGGTGTTGATCAAGATGAGGGAAGTGGCAGAGGCGTTTCTTGGTCATACCGTGAAGAACGCTGTTATTACTGTCCCTGCTTATTTCAACGACTCGCAAAGGCAAGCCACGAAAGATGCAGGGGCCATTTCAGGGTTGAATGTGTTGAGAATCATCAACGAACCCACTGCCGCTGCTATTGCCTACGGGTTGGACAAGAAGGCTTCAAGAAAAGGTGAACAGAACGTGCTTATTTTCGACTTGGGTGGTGGAACCTTTGATGTTTCCATATTGACCATCGAGGAGGGGATTTTCGAAGTGAAGGCCACCGCTGGTGATACTCATCTTGGAGGTGAAGATTTCGATAACAGGTTGGTGAATCACTTTGTTACAGAGTTCAAAAGGAAGCACAAAAAGGATATTAGCGGGAATGCTAGAGCGTTGAGGAGGTTGAGGACAGCCTGTGAGAGAGCCAAGAGGACGTTGTCTTCAACCGCGCAGACAACCATTGAAATCGATTCTTTATACGAAGGGATTGATTTCTATGCAACGATTACCAGAGCGAGGTTTGAGGAGATGAACATGGACTTGTTCAGGAAGTGCATGGAGCCGGTGGAGAAGTGTCTGCGTGATGCCAAGATTGACAAGAGTCACGTTCATGAAGTTGTTCTTGTTGGAGGGTCCACCAGGATCCCGAAGGTTCAGCAACTGTTGCAGGATTTCTTCAACGGGAAAGAGCTTTGCAAGAGCATTAACCCCGACGAAGCTGTTGCTTATGGTGCAGCTGTTCAGGCTGCGATTTTGAGCGGTGAAGGGGACGAGAAGGTTCAGGATTTGTTGCTGTTGGATGTGACTCCACTCAGTCTTGGGCTTGAAACTGCTGGTGGTGTTATGACAGTGTTGATTCCGAGGAACACAACGATTCCGACCAAGAAGGAGCAGATTTTCTCGACTTATTCCGATAACCAACCCGGGGTTTTGATCCAAGTGTTTGAAGGAGAGCGTGCTCGAACAAAGGACAACAATCTTCTCGGGAAGTTTGAGCTCACTGGGATCCCTCCTGCACCAAGAGGCGTTCCTCAGATTAATGTCTGCTTCGACATTGATGCTAATGGGATTTTGAATGTCTCTGCGGAGGATAAAACCGCGGGTGTGAAGAACAAGATTACTATAACAAACGACAAGGGTAGGTTGAGTAAGGAGGAGATAGAGAAGATGGTGAAGGATGCAGAGAGGTACAAGGCAGAGGATGAAGAGGTGAAGAAGAAGGTGGAGGCGAAAAACTCGCTCGAGAATTATGCTTACAACATGAGGAACACGATAAAGGATGAGAAGATAGGGGGGAAGTTGGGGGCGGATGATAAGCAGAAGATTGAGAAGGCTGTGGAGGATGCGATTCAGTGGCTGGAGGGGAACCAGTTGGCGGAAGTGGACGAGCTTGAAGACAAGCTGAAGGAGTTGGAAGGAATCTGCAACCCCATCATTGCCAAGATGTATCAGGGTGGTGCTGGTGGAGATGTTCCTATGGCTGATGACATGCCTGGTGGTGGGTCTGGTTCTGCTGCTGGACCTAAGATTGAAGAAGTTGACTGA 1944 0.4943 MAAKEGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDSSVQNDMKLWPFKVVAGPGDKPMIVVTYKGEEKKFSAEEISSMVLIKMREVAEAFLGHTVKNAVITVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKASRKGEQNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKHKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEEMNMDLFRKCMEPVEKCLRDAKIDKSHVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLGADDKQKIEKAVEDAIQWLEGNQLAEVDELEDKLKELEGICNPIIAKMYQGGAGGDVPMADDMPGGGSGSAAGPKIEEVD* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2399 647 CDD HSPA1-2_6-8-like_NBD 8 386 - -
Vra7g2399 647 Gene3D Actin; Chain A, domain 4 234 317 - -
Vra7g2399 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 390 543 IPR029047 -
Vra7g2399 647 Coils Coil 520 540 - -
Vra7g2399 647 MobiDBLite consensus disorder prediction 619 647 - -
Vra7g2399 647 Gene3D - 9 383 - -
Vra7g2399 647 SUPERFAMILY Actin-like ATPase domain 195 387 IPR043129 -
Vra7g2399 647 Gene3D - 191 365 - -
Vra7g2399 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 548 IPR029047 -
Vra7g2399 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 623 IPR029048 -
Vra7g2399 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vra7g2399 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vra7g2399 647 Pfam Hsp70 protein 8 617 IPR013126 GO:0005524|GO:0140662
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 7 20 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 35 47 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 57 65 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 145 165 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 208 218 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 336 352 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 368 388 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 395 414 - -
Vra7g2399 647 PRINTS 70kDa heat shock protein signature 476 492 - -
Vra7g2399 647 PANTHER HEAT SHOCK PROTEIN 70KDA 3 624 IPR013126 GO:0005524|GO:0140662
Vra7g2399 647 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Vra7g2399 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vra7g2399 647 Gene3D - 544 618 IPR029048 -
Vra7g2399 647 Coils Coil 587 607 - -
Vra7g2399 647 Gene3D - 70 125 - -
Vra7g2399 647 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2399 Vra-Chr7 44140669 44142868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2399 1 647 Calmodulin-binding Proteins AT1G16030 87.037 0.0 1171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2399 K03283 - gmx:100790356 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2399 7 44140669 44142868 Vra7g2399 7 44140669 44142868 ECH