Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2398 ATGCAGCAGAGTGATCAGACGGTGTTGAGTTTGAGGCCCGGCGGTGGAAAAGGCAGCAGGCTCCTCGGCCCTCGATTCGACTCATCCTCCTCGTCTTCTGCTTCCCCTGCTTTTGGCTCCTTTTCTGCTGATCTTCCTCTCCTGCGTCCTCATGGCGGCTCTCCCTCTCCCTTCTCCATTAAGGCTGGAGATTCCCGGTTTGAAGGTCGTGAGCGTGTGCGATATACCAGGGAGCAGCTCTTGCAACTCAGAGAGGGTGTTGAGATCCTTGATGATGTTTTGAAGATCAGACAAGAAATTGTAGCTGAACTTTTTGGTGAAGATCAAAGTTGGGCCCGCCCAGAAAGTAACCCCTCACATCAATTTCAAAATCGATATTCTGAGCCAGATAATCGTGACTGGCGTGGACGATCTGGCCAACCTTTTGGTAATGCAGATGAGAGGTCTTGGGATAATCTCAAGGAGAATAGGGAGTTTGGAAACAATCGTCAAGAGCAACTGAATTCTCAGTTTTCAAGGGCACAAATAACTTCTAACCAAGGGGGTGGACCTACTCCAACACTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAACTCTCTCTGAAAAAGATCGTGTCTTAAAGACAGTTAAAGGAATACTAAATAAGTTGACTCCTGAGAAATTTGATCTCTTGAAGGGTCAGTTGATTGATTCTGGCATTACATCTGCCGACATATTGAAGGGAGTTATTTCACTAATATTTGATAAGGCAGTGCTAGAACCAACATTTTGCCCAATGTATGCCCAGCTATGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGAAATCACTTTTAAGAGAGTGCTCTTGAATAACTGCCAGGAGGCTTTTGAAGGTGCAGATAACCTGAGGGAAGAAGTGAGACAGATGACAGCTCCTGAGCAGGAGATGGAGCGAAGGGATAAGGACAGACTTGTCAAGATTCGAACCCTTGGAAACATTCGTTTAATTGGTGAGCTATTGAAGCAAAAAATGGTTCCCGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGTCCACCTGACAGCAAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCAATATGTCAATTTTTCAACACTATTGGTAAGCAGCTGGATGAAAGCCAAAAATCGAGGCGTATTAATGATATGTACTTCAGTCGTTTGAAAGAATTGAGCACCAATCCCCAACTTGTTCCACGGCTGCGGTTTATGGTTCGTGATGTTCTAGATTTGCGTTCTAATAACTGGATTCCTAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATGAGAAATAGCCGTGTAACTTCTGGTGTTCAAGGAAACATTAGTCAGGGAGGATTTCCAATTGCCCGACCTGGTACGGGTGGTATGATGCCTGGGATGCCGGGGACAAGGAGGATCCCTGGAATTGATAATGACAACTGGGAGGTTCCCAGGACAAGATCAATGCCGAGAGGAGGAGACATGTCAGGCATGCAAGCTGGAGGACGTGGTCAGTCTCCTTTCATTTCTAAGACGCCAACTGTTAGCTCAAGGTTACTACCTCAAGGTAGTGGTGGTACTATAAGTGGGAGAAGCAGTGCCCTGGTGCATGGAGGTGGTGGTGCTCCTTCTGCTCGTCCATCAAATGTTGGTTTGAGTACCGAGCCCACACCTCAAATGCCTTCACCTGTTAAAGCTGTTTCTGCCATACCCTCTGAGAAGCCACAAGCTTCAGCTCCAAAATTGAATGTTGACGAACTTCAGCGTAAAACTAGTTCTCTTCTGGAAGAATATTTCAGTGTCCGGCTTTTGGACGAGGCATTGCAGTGTGTGGAGGAACTAAAAGCTCCTGCTTATCATCCCGAGGTTGTGAAGGAAGCCATTTCCATTGGACTTGATAAAAGTCCGCCATGTGTTGAACCTGTTGGCAAACTTCTTGAGTATCTGTTCGTGAAGAAGATTCTTTCAGCCAGAGACATAGGGACTGGGTGCATGTTATTTGCTTCTCTGCTGGATGATATCGGCATAGACTTACCTAAAGCACCAAATAATTTTGGTGAGATAGTAGGGAAACTAGTTTTGGCTGGGGCTTTGGATTTTAAGGTGGTGAGAGACGTCCTGAAGAAGGTGGATGATGACCGGTTCCAGAAAGCAATATTTTCTGCTGCATTGCAGGTAATTAGCTCTGCATCTGGGCAAGCCGTGTTGGATTCCCAAGCATCTGATATTGAGGCCTGTCAGAGTCTGTTCAACTGA 2358 0.4618 MQQSDQTVLSLRPGGGKGSRLLGPRFDSSSSSSASPAFGSFSADLPLLRPHGGSPSPFSIKAGDSRFEGRERVRYTREQLLQLREGVEILDDVLKIRQEIVAELFGEDQSWARPESNPSHQFQNRYSEPDNRDWRGRSGQPFGNADERSWDNLKENREFGNNRQEQLNSQFSRAQITSNQGGGPTPTLVKAEVPWSARRGTLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQEAFEGADNLREEVRQMTAPEQEMERRDKDRLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESQKSRRINDMYFSRLKELSTNPQLVPRLRFMVRDVLDLRSNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRVTSGVQGNISQGGFPIARPGTGGMMPGMPGTRRIPGIDNDNWEVPRTRSMPRGGDMSGMQAGGRGQSPFISKTPTVSSRLLPQGSGGTISGRSSALVHGGGGAPSARPSNVGLSTEPTPQMPSPVKAVSAIPSEKPQASAPKLNVDELQRKTSSLLEEYFSVRLLDEALQCVEELKAPAYHPEVVKEAISIGLDKSPPCVEPVGKLLEYLFVKKILSARDIGTGCMLFASLLDDIGIDLPKAPNNFGEIVGKLVLAGALDFKVVRDVLKKVDDDRFQKAIFSAALQVISSASGQAVLDSQASDIEACQSLFN* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2398 785 MobiDBLite consensus disorder prediction 505 599 - -
Vra7g2398 785 ProSiteProfiles MI domain profile. 620 742 IPR003891 -
Vra7g2398 785 Pfam MA3 domain 621 733 IPR003891 -
Vra7g2398 785 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 784 IPR045208 GO:0003743
Vra7g2398 785 MobiDBLite consensus disorder prediction 537 565 - -
Vra7g2398 785 SMART if4_15 209 435 IPR003890 GO:0003723|GO:0005515
Vra7g2398 785 MobiDBLite consensus disorder prediction 581 595 - -
Vra7g2398 785 MobiDBLite consensus disorder prediction 24 39 - -
Vra7g2398 785 MobiDBLite consensus disorder prediction 1 63 - -
Vra7g2398 785 Gene3D - 200 436 - -
Vra7g2398 785 SUPERFAMILY ARM repeat 614 772 IPR016024 -
Vra7g2398 785 SMART ma3_7 621 733 IPR003891 -
Vra7g2398 785 MobiDBLite consensus disorder prediction 111 148 - -
Vra7g2398 785 Pfam MIF4G domain 209 435 IPR003890 GO:0003723|GO:0005515
Vra7g2398 785 Gene3D - 613 780 - -
Vra7g2398 785 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 784 - -
Vra7g2398 785 SUPERFAMILY ARM repeat 202 437 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2398 Vra-Chr7 44125326 44131487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2398 1 783 Eukaryotic Initiation Factors Gene Family AT5G57870 65.912 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2398 K03260 - gmx:100781275 1367.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2398 7 44125326 44131487 Vra7g2398 7 44125326 44131487 ECH