Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2394 ATGGAATTCAAGTTTCGTCATGGCGAAAACCGAAGCACTAGCACACTGTTACCGCAGCAGCGCACTCTCGCTCTCCCCACTGTCCCTTTGGTCTCCGGTCACCCATTACGAGGTGGTTTTCCGGGTATTATCCCGACGACAAGAATGTACCCAACTTCGGTACCGATCAGCCCGGAGGAAGTAATCCGGCGAGAGATGGAAAGGGAGCAGATAAGGCGAGAGATGGAGAAGGATGAAATAAGGAGAGAGATTCTCGCCAACGAAATGGCACGGCGGATGGAATTGGAGGAGGAGGTGAGGAGGGAACTGATGTCCGAAAGAGCACTGAAAATGCCGATACACAGAATGGAAGGAATCAATTATGGGTCGCTGTCTATGATCCCAGGAAGGAGACTGCACAACTCTGTTCATAACAGCAACATATTTGGTGGACCACAACCCCAGTTAGCTCCTCATAAAGTTGACATCACACAGTTCTATAAGCAGACGCCAAATGAAACTCTGACTAATGAGCCAAATTTTGTTCTTTCTGGTCCAAAGTGCAAAGAGGTATTTGGGAATGTTCTTTCTGGTGTGAAACACAAAGAGGTGCTAGATGTTAATGCTGTGAAACGAAAACTGGAGGCTTCTTTTCGGGTTGATGACAAACATTCTGAATCTAGCTTGGAGAAGAAAACCAAGAAGGATTGGAGTTGTGCATTATGTCATATTGTTACCACAAGTGAAAAAGGCTTGAATGATCATCTTCAAGGGAAAAAGCACAAGATGAAAGAAGCATCTAGAACTCCAACAATAGGATTGGTAAGGCGACAGGATGGTGAAAAACTTCAATCTGGCATGAAACCTGCATACAAAGGTAAACTGGAACCCCTAAAAATGGATTTGGTTGTGCAGAAAACCCAAGATTTAGGTGACACTGATAATGAAAATGAATCGACCACTGAGGAAAAAGTTCAGAAAACCAAAGCATTGACTACAAGGAAGAAGTTTAATTTTTATTGTGCATTTTGTCAAGTTCGAACTCACTCAGAAATTATCATGCAGAATCATAAAAATGGAAAAAAGCATCTGGCTAATATTAAAAAACATAACCCAAACAGTTCTGTTGATGCTGTTTGTGCTGCTGAAAATTCCGAGTAA 1140 0.4272 MEFKFRHGENRSTSTLLPQQRTLALPTVPLVSGHPLRGGFPGIIPTTRMYPTSVPISPEEVIRREMEREQIRREMEKDEIRREILANEMARRMELEEEVRRELMSERALKMPIHRMEGINYGSLSMIPGRRLHNSVHNSNIFGGPQPQLAPHKVDITQFYKQTPNETLTNEPNFVLSGPKCKEVFGNVLSGVKHKEVLDVNAVKRKLEASFRVDDKHSESSLEKKTKKDWSCALCHIVTTSEKGLNDHLQGKKHKMKEASRTPTIGLVRRQDGEKLQSGMKPAYKGKLEPLKMDLVVQKTQDLGDTDNENESTTEEKVQKTKALTTRKKFNFYCAFCQVRTHSEIIMQNHKNGKKHLANIKKHNPNSSVDAVCAAENSE* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2394 379 Pfam Zinc-finger double-stranded RNA-binding 331 356 IPR022755 -
Vra7g2394 379 Gene3D Classic Zinc Finger 308 364 - -
Vra7g2394 379 PANTHER OS06G0651300 PROTEIN-RELATED 1 365 - -
Vra7g2394 379 SMART c2h2final6 230 254 IPR013087 -
Vra7g2394 379 SMART c2h2final6 332 356 IPR013087 -
Vra7g2394 379 PANTHER OS06G0651300 PROTEIN 1 365 - -
Vra7g2394 379 Gene3D Classic Zinc Finger 213 262 - -
Vra7g2394 379 SUPERFAMILY beta-beta-alpha zinc fingers 331 363 IPR036236 -
Vra7g2394 379 SUPERFAMILY beta-beta-alpha zinc fingers 212 259 IPR036236 -
Vra7g2394 379 SMART ZnF_U1_5 329 363 IPR003604 GO:0003676|GO:0008270
Vra7g2394 379 SMART ZnF_U1_5 227 261 IPR003604 GO:0003676|GO:0008270
Vra7g2394 379 Pfam Zinc-finger of C2H2 type 230 254 - -
Vra7g2394 379 Coils Coil 63 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2394 Vra-Chr7 44100243 44103084 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2394 183 371 C2H2 Transcription Factor Family AT5G61190 25.604 5.84e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2394 - - var:108336528 583.563