Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2378 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATGCATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCTTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGTGAGTCAGATGGCAAGTATCATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCATTTTCTGAGGTCTAGTGAAAGCTGGCTCTCCCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTATTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATCGTTTACAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGTCATCCTGTGTTTAGAATTTATGGACAGGATCCCTTTGATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCAAAAAGAAGCAAAAAGGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTCGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGGCCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCAAGTAGACTGGATGAACCCCAAGGCAGATGTTGCCCTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACTCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAATCAAGACATCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTGGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTTCTAAAAGGACCTCGGAATCCAATACATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCTTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTATTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCATCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCGACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCGATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCACCTCCTCCACCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTGCACCACCTCCTCCTCCTCCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGGACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTCTCTCTGGGCAAGCTGCAGGTTTTACTATAGTACCAACTCCTCCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTCTAGCCCCTTCCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTGCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGCGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCATTGCACGATTTAATGACCTCAGTACTAACACTGGAAGAGTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAGATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACGCGGGCACGGGACAAAAAGTTGACTCTTATGCATTACCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCTTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCCATATCAGAAACTTTCCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTGGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGGATTTTACCTACACCTATCCCGACTGGCAATGTCAAATAG 3609 0.4436 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDAWKEGNYNYKEYMDGIVGQLKENSLDASILIFNFREEGTVSQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFMLAALLIYRKAYTGEQRTLDIVYRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFDADKVHKMLYSTPKRSKKVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRASCFEEKDGLPMEAFAKVQEIFSQVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSIKTSPVTDMSRKEDNTNKFEGIPQQPGTPNNICQESTRSSKRTSESNTCPTRPTNLDIKQQAPHLAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSYYVVPLQSKHQSQDRSHSSISIPTPDTQLSSTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDHRRVRAAPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDGPSPPLSLKEEQPTRFKPPCLSGQAAGFTIVPTPPPPPLSSEVLYSNCTNSSLQKSLAPSPPPPPGAPAPPPPPGAPAPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLTLEESALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFRKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTPIPTGNVK* 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2378 1202 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 309 IPR035892 -
Vra7g2378 1202 Coils Coil 1162 1189 - -
Vra7g2378 1202 Gene3D - 171 312 - -
Vra7g2378 1202 Gene3D Formin, FH2 domain 786 1172 IPR042201 -
Vra7g2378 1202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 74 162 IPR029021 -
Vra7g2378 1202 Coils Coil 1068 1092 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 365 527 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 380 396 - -
Vra7g2378 1202 SMART it6_source 572 1202 IPR015425 -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 540 793 - -
Vra7g2378 1202 ProSiteProfiles Formin homology-2 (FH2) domain profile. 788 1187 IPR015425 -
Vra7g2378 1202 ProSiteProfiles C2 tensin-type domain profile. 171 309 IPR014020 -
Vra7g2378 1202 SMART PTEN_C2_2 169 308 IPR014020 -
Vra7g2378 1202 SUPERFAMILY Formin homology 2 domain (FH2 domain) 863 1189 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 571 609 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 1183 1202 - -
Vra7g2378 1202 Pfam C2 domain of PTEN tumour-suppressor protein 172 308 IPR014020 -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 540 558 - -
Vra7g2378 1202 PANTHER FORMIN-J 1 669 - -
Vra7g2378 1202 PANTHER FORMIN-J 666 1185 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 689 755 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 674 688 - -
Vra7g2378 1202 Gene3D Protein tyrosine phosphatase superfamily 13 170 IPR029021 -
Vra7g2378 1202 Pfam Formin Homology 2 Domain 792 1161 IPR015425 -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 765 793 - -
Vra7g2378 1202 MobiDBLite consensus disorder prediction 409 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2378 Vra-Chr7 43947139 43960779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2378 735 1185 Protein tyrosine phosphatase (PTP) family AT5G58160 67.699 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2378 - - var:108329436 1268.06