Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2376 ATGAGTGAGAAAGAGAAAGGAGTGGGCGAGGGACAATCGACGTTGTTGCACGGGAAGTACGAGCTCGGTAGAGTGTTGGGGCATGGAACGTTCGCGAAGGTGTACCACGCGCGGAACCTTAAGACGGGGCAGCACGTGGCCATGAAGGTGGTGGGGAAGGAGAAGGTGATAAAGGTTGGGATGATGGAGCAGGTAAAGAGGGAGATCTCGGTGATGAAAATGGTGAAACACTCCAACATCGTCGAACTCCACGAAGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGCGGCGGAGAGCTCTTCAACAAGGTCTCCAAAGGTCGGTTGAAGGAGGACGTCGCCAGACTCTACTTCCAGCAGTTGATCTCCGCGGTCGACTTTTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGAACACGGCAATCTCAAGGTCTCCGACTTCGGACTCACCGCCTTCTCCGACCACCTCAAGGAGGATGGACTGCTGCACACCACGTGCGGCACGCCCGCCTACGTGTCGCCGGAGGTCATAGCGAAGAAAGGGTACGACGGTGCCAAGGCTGACATATGGTCGTGTGGGGTCATCCTCTACGTCCTCCTGGCAGGGTTTTTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAGAAAATTTACAGAGGAGACTTCAAGTGTCCACCTTGGTTTTCAGCGGAGGCGAGAAGGCTTGTTACCAGACTCCTCGACCCCAACCCGAATTCCCGGATTAGTATAAGTAAAGTCATGGAGTCTTCCTGGTTTAAGAAACCGGTGCCGAGGAAGGTGGAGGAGGTGGCGAAGGTGGATTTGGAGGAGATGTGTGAGAGGCCTGCCACCATGAACGCGTTTCACATAATCTCGTTGTCGGAGGGGTTTGATTTGTCGCCCCTGTTTGAGGAGAAGAAGAGGGAGGAGATGAGGTTCGCAACGGCGGGGACGCCCAGCAGCGTGATATCACGGCTGGAGGAGGTGGCGAAGGCGGGGAAGTTCGACGTGAAAAGTAGCGAGACGAAGGTAAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGAAAGCTGGCTATTGCGGCGGATATTTACGCCGTGACACCGTCCTTTATGGTGGTGGAAGTGAAGAAGGACAATGGAGATACCCTGGAGTACAACCAGTTCTGCAGCAAGCAGCTTCGTCCTGCGCTTAAAGACATCTTCTGGAATTCCCCACAGAATTCCACACCTGCAATAGTGCTTGAATGA 1293 0.5491 MSEKEKGVGEGQSTLLHGKYELGRVLGHGTFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHSNIVELHEVMASKSKIYIAMELVRGGELFNKVSKGRLKEDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLTAFSDHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSAEARRLVTRLLDPNPNSRISISKVMESSWFKKPVPRKVEEVAKVDLEEMCERPATMNAFHIISLSEGFDLSPLFEEKKREEMRFATAGTPSSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSPQNSTPAIVLE* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2376 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vra7g2376 430 Gene3D Phosphorylase Kinase; domain 1 12 99 - -
Vra7g2376 430 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2376 430 Gene3D Kinase associated domain 1, KA1 294 418 - -
Vra7g2376 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Vra7g2376 430 Pfam NAF domain 297 353 IPR004041 GO:0007165
Vra7g2376 430 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 6 15 420 - -
Vra7g2376 430 SUPERFAMILY Protein kinase-like (PK-like) 17 287 IPR011009 -
Vra7g2376 430 CDD STKc_SnRK3 19 273 - -
Vra7g2376 430 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Vra7g2376 430 CDD CIPK_C 301 413 - -
Vra7g2376 430 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Vra7g2376 430 PANTHER - 15 420 - -
Vra7g2376 430 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2376 430 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2376 Vra-Chr7 43923851 43925663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2376 5 426 CBL-interacting serine-threonine protein kinases AT4G30960 72.831 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra7g2376 Pkinase 6.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2376 - K07198 var:108321114 849.736