Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2372 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTCTCTTTAACAATGGTGGTAACAATCAGCAACAGATTCACTTTGATGCAACTTCAAACGAGGATTTCCTCAAGCAAATGCTCTCCAACCTTCCTTCGTCTTCTCCATGGACACTCGACCCCAAACACAACCCCTTATGGGACCCTAATTCCGACGAAACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAGGCCAACTTGGCCTCCAAGTTTCGTAACCACCAGATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACACCACCATCAACTCCTCCTCTCCTCCGCCGCTGCCAATTCCCCCCTCCTCCAAATGCCTGTCTCCTCTCTTAACGACGTCGTTCACGCCTCCTCCTTCAAATCTCCTGCTCCAAATGCTGACCCTTCTTCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGCGCCGCCCAACCATCCAACCAAACTCACCATTTTCAACTTCCTCAACAGGGGCAGAGTTTTGGAGCTTCGGCTCCGGCTACTGGTGGTGGCGGTGGTTCCGGGCAGCCGAAGCAGAGGATTAGAGCGAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCGGAAAGGTTACGGAGGGAGAGAATAGCAGAGCGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCTTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCGCTGACTGCGTTCAACCAAAACGCAACAACACCAACGGAAACTCAAACGGCAACCATGCTTCTTCAAACGACACCCTCACCACGACGGAGCAACAGGTGGCCAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCCCTGGCCACTGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCACCAACAACGCTGATGGGCCCTCCTCTCCCGGAATATCCGCTCTCACCCTCCACTCATCCACTCTCAGTAACGGCCTCGTCAAAGACACCGCCTCCGTTTCAAAGTCCTGA 1200 0.5333 MQPCSREMQGANNNSLFNNGGNNQQQIHFDATSNEDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPLLQMPVSSLNDVVHASSFKSPAPNADPSSVQPLYNAFSASLQGAAQPSNQTHHFQLPQQGQSFGASAPATGGGGGSGQPKQRIRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGADCVQPKRNNTNGNSNGNHASSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFTNNADGPSSPGISALTLHSSTLSNGLVKDTASVSKS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2372 399 Gene3D - 204 266 IPR036638 GO:0046983
Vra7g2372 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Vra7g2372 399 SMART finulus 215 264 IPR011598 GO:0046983
Vra7g2372 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 269 IPR036638 GO:0046983
Vra7g2372 399 MobiDBLite consensus disorder prediction 1 26 - -
Vra7g2372 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 365 - -
Vra7g2372 399 MobiDBLite consensus disorder prediction 180 215 - -
Vra7g2372 399 PANTHER TRANSCRIPTION FACTOR BHLH69 26 365 - -
Vra7g2372 399 MobiDBLite consensus disorder prediction 291 314 - -
Vra7g2372 399 MobiDBLite consensus disorder prediction 288 314 - -
Vra7g2372 399 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2372 Vra-Chr7 43888353 43891777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2372 198 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 68.878 4.04e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g2372 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2372 - - pvu:PHAVU_003G157100g 594.349