Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2364 ATGGACGAAGAAAACCAACGAAGTGTGCCGGTTCTGCCATGGATGCGCCACCCCCTTGACGTCACTCGCTGTGAACAACTCTCCCTCCGCAGAGTTCCTTTTCTGGACTGCAGATTAAAGTCGGCGTTAGAGAACATGAAAATCTCGAAGCTTTTCCCGGTTCAAGTCGCACTATGGCAAGAAACTATTGGACCAGGTAACTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGAAAAACCTTGGCCTATGCTCTTCCCATTGTGCGAAAGTTGTTGCCTACTTCCACTGTCAAGTGCCTTCGTGCTTTGGTTGTGGTTCCCACCCGCGACCTTGCCTTGCAGGTTAAACAGGTTTTCGATGCTATTGCACTGCCATTAGGCCTGCGTGTGGGGTTGGCTGTTGGCCAATCTTCGGTTGCTGATGAGATATCTAGTCTCGTTTACCTACCGGGGGAAGAGGAGGGTGTAGATCCTGGGTTTTTGTCTCCGTTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCAACTTGTCTAGGGGTTTCACATTGAAGCATCTTCATTATCTTGTGGTTGATGAAGCTGATCGGTTGCTCCGGGAGGACTACCAGTCCTGGTTGCCCACTGTACTTAAATCGACCCAATCTAGCAACAATGATGATGGTGGTGGTGGTGGTGATGATGTTTTCCAATTGGGGTTCCCTTATTCTCCCTGGAGTAGAAGATCATGTAGTGGAGTTGAGAGGGGGTCTAACCCTCACTCTAGGCTGGCAAAGGTGGTTTTGTCTGCGACATTAACTCGAGATCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCGTTGTTCCTCAGTGCTGGCAAAATGCGGTACAGGCTCCCAGAAAATTTGGAATCATTCAAACTGATTTGTGAAAGAAAGGTCAAACCCCTGTACTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGACATCAAAGAGTATTCTGGTCGTCAACATCAACGTGTAAGAAGCAAGACACTGAATGAGTTTAGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGAAATGACGCGTGGAATGGATGTAGAAGGTGTAAGAAATGTTATTAATTATGACGTGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTTACATTGATGTCAAATGATGAGGTTGGACGGTTTAAGAGGTTGATGAAAAAGGCTGAGGCTAGTGCTTGTCTTGAGCATAATGTTCCTTCCCATTTGATTGAAGAACTTCATAGTACCTACCAATTAGCACTATCAAAATTAAAGGAGATAATATTGGAGAGTCGCAGGAAGCCCAAGGATAAGTCCTGTCAATAG 1506 0.4582 MDEENQRSVPVLPWMRHPLDVTRCEQLSLRRVPFLDCRLKSALENMKISKLFPVQVALWQETIGPGNFERDLCINSPTGSGKTLAYALPIVRKLLPTSTVKCLRALVVVPTRDLALQVKQVFDAIALPLGLRVGLAVGQSSVADEISSLVYLPGEEEGVDPGFLSPFWFQSKVDILVATPGRLVDHVNLSRGFTLKHLHYLVVDEADRLLREDYQSWLPTVLKSTQSSNNDDGGGGGDDVFQLGFPYSPWSRRSCSGVERGSNPHSRLAKVVLSATLTRDPGRLVQLNLHHPLFLSAGKMRYRLPENLESFKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGRQHQRVRSKTLNEFRKGQFQVLVSSDEMTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFKRLMKKAEASACLEHNVPSHLIEELHSTYQLALSKLKEIILESRRKPKDKSCQ* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2364 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 452 IPR027417 -
Vra7g2364 501 SMART ultradead3 47 311 IPR014001 -
Vra7g2364 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Vra7g2364 501 Gene3D - 16 298 IPR027417 -
Vra7g2364 501 Gene3D - 308 500 IPR027417 -
Vra7g2364 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Vra7g2364 501 CDD DEADc_DDX51 39 296 - -
Vra7g2364 501 CDD SF2_C_DEAD 308 439 - -
Vra7g2364 501 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 33 479 - -
Vra7g2364 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Vra7g2364 501 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Vra7g2364 501 SMART helicmild6 347 431 IPR001650 -
Vra7g2364 501 Pfam DEAD/DEAH box helicase 59 281 IPR011545 GO:0003676|GO:0005524
Vra7g2364 501 PANTHER RNA HELICASE 33 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2364 Vra-Chr7 43789229 43797305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2364 57 445 Eukaryotic Initiation Factors Gene Family AT3G19760 23.846 7.96e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2364 K14807 - gmx:100789424 704.901