Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2356 ATGCCTTCTAATCTCATCGTTTTCTGCACTTTCTTTCTCATCTTATTCTCTTTAAAATCTCAGTCCTTTTCAGATAACCACCCTTCATGGGTGAAAGCCGGGTATTACTATTCCGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACGCTTTTCACTCACCTTTTGTGTGCTTTTGCCTTCATAAACCCCACCACCTACAACATCTTCATCAACTCTTCCGAGGAGGAGAAGTTCTCCACCTTCACCAACACGGTCAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCAGGGCTGGCAGGGAGGACTCTTTGGTGTTCACCTCAATGCTAAATAGATCTTCTTACAGGAAGCTTTTCATTGATTCTTCCATCAGAACAGCCAGGTTCTATGGCTTTCATGGCATAGACCTTACTGGGGCGGGGCCAAGTTCCGAGGTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGTGCTGCAATAACTTCCGAGGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTAGTGATGGCAGGTTACTACCTTAAGGCTTCGGACTCCTTGAGTTACCCCTTCGATTCAATGCAGAAAAATTTGGATTGGGTGCACTTTGTGGCTTATGATTACTATCTCCCTAAGGTGGCAAATTCCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAACACTGATTCTGGCATCAGAGAGTGGAGGAGGAGGGGGTTCTCGTCTAAGAAGCTGTTAATTGGGTTGCCTTATCATGGATATGCGTGGAAACTTGTGACTCCTGCTGCAAACAGTGGCGTGGGAACACCGGCTTCAGGACCTGCCATTACAATAGATGGTTCCATGGGTTACAAGTTCATAAAGAGTTACATCAAAAGCTTTGGAAATGGAGTTGTTTCACGTTACAATGCAAGTTTTGTGGTGAACCAGTTCACCGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTTGAAGTCATCAGGGCCAAAGTTTCTTATGCAAGGGAAAATGGGCTACTTGGTTACAGCGTGTTCCAAGTAGGCAATGACGAAAATTGGGAACTTTCAATAGGGGCAGCCCAAGCTGTAGATGAAGAATTTGAAGATCATCACAAGATGAGGTTGCTGATAATTGTTCTGCTTGCTACTCTGACTTTGGCCCTTCTTTTTGGAATAGTATTTTGCTACTGCAACCCAGGGGCCGTAGCCACTGTTACCAAACTACTGTATAAACTGAGATATTTACCAGAAGCAGAAAAGGATATCGATGCAAACGGCTCTGATTTGACAGTATTCAGCTATCTCACTATTAAAGCGGCAACAAATAACTACTCAAAAGATAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTATACAAGTGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACCAAGTACGATGTTTACAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAGAGGACTTCATGTTATTATGGCATGCATGAAGATATGACCCTTTTGGAATATGCATATGAACTGTGGAGGGAAGGAAGAGGTGTGGAGTTTGTTGAGCCTTCATTGGATGATGATACAGCATCTCCTTGTAAAATCATGAGATGCATGCAGATAGCTCTACTGTGTGTTCAGGAAAACTCTGTGGATAGACCTTCAATGTTGGAAGTTGATTCGCTGCTGAAGAATGAAAATGCAGTTATTGGTACTCCCAAAGTTCCTGCCTTTTCAGTTCAGAAACGTGAAGATGAGAAAGAAACATGTCATAGCGGAGTCAATTTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATGA 1866 0.4309 MPSNLIVFCTFFLILFSLKSQSFSDNHPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEEKFSTFTNTVKLQNPSVSTLLSIRAGREDSLVFTSMLNRSSYRKLFIDSSIRTARFYGFHGIDLTGAGPSSEVANFGTLLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQKNLDWVHFVAYDYYLPKVANSTAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWKLVTPAANSGVGTPASGPAITIDGSMGYKFIKSYIKSFGNGVVSRYNASFVVNQFTVASTTWVNFDDVEVIRAKVSYARENGLLGYSVFQVGNDENWELSIGAAQAVDEEFEDHHKMRLLIIVLLATLTLALLFGIVFCYCNPGAVATVTKLLYKLRYLPEAEKDIDANGSDLTVFSYLTIKAATNNYSKDNRLGEGGFGTVYTSGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGMHEDMTLLEYAYELWREGRGVEFVEPSLDDDTASPCKIMRCMQIALLCVQENSVDRPSMLEVDSLLKNENAVIGTPKVPAFSVQKREDEKETCHSGVNFYSINDVTISQLAPR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2356 621 SMART 2g34 30 357 IPR011583 GO:0008061
Vra7g2356 621 SUPERFAMILY Protein kinase-like (PK-like) 465 592 IPR011009 -
Vra7g2356 621 ProSitePatterns Protein kinases ATP-binding region signature. 457 478 IPR017441 GO:0005524
Vra7g2356 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 466 - -
Vra7g2356 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 467 617 - -
Vra7g2356 621 SUPERFAMILY (Trans)glycosidases 33 357 IPR017853 -
Vra7g2356 621 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 467 617 - -
Vra7g2356 621 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 20 466 - -
Vra7g2356 621 Gene3D Phosphorylase Kinase; domain 1 422 471 - -
Vra7g2356 621 Gene3D - 258 328 IPR029070 -
Vra7g2356 621 Pfam Protein tyrosine and serine/threonine kinase 469 570 IPR001245 GO:0004672|GO:0006468
Vra7g2356 621 Gene3D Glycosidases 45 358 - -
Vra7g2356 621 Pfam Glycosyl hydrolases family 18 35 357 IPR001223 GO:0005975
Vra7g2356 621 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 373 IPR001223 GO:0005975
Vra7g2356 621 Gene3D Transferase(Phosphotransferase) domain 1 472 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2356 Vra-Chr7 43736355 43740034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2356 4 371 Glycoside Hydrolase AT4G19810 45.013 5.39e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra7g2356 Glyco_hydro_18 3.6e-51 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2356 - - aprc:113847882 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2356 7 43736355 43740034 Vra7g2356 7 43736355 43740034 ECH