Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2349 ATGCCGGACGGAGAGTCCTCCATTGTGGTGGACGACCAACCCTCCACGGACCCTTCTTTAAGCCTCTCCGATCAACAACTGTCCCTCGGTCTTTCCCAAGTTGAACTTGACGATGACGACGCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAAACTCATATTGCTGTGCTTCTTATGCATGAAATGGGTCATTTAATTCGGAAACCACAGAAGAACATATGTGTCTTTCTTGCCCCTACCGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGAATTTTCTGTGGAAGTTCCAAGCGCTTAAAACGGCGTCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTGCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGAAATTATGAAAATTTTCTACAATAGTAATTCTTCAAAGGTTCCTCGTATATTTGGCATGACTGCATCCCCTGTTGTTGGAAAAGGAGCTTCCAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATTTGTGACCACTCCTGTAATTAATATATATCATTATGCTTCAACTGCAAGTGGGGAAACTAGCATGTACTTGAAAATTGAAGAAATTAAACGCCAGTGCATAGCAACCCTTGGTAGAAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAGGTTGCTGAACTGTTTACTTCACAGTGCATTAAAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTTTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGACTGTGAGATCCCTGTCATGCATACTTCAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCCCGTAAAACCATGAACATGATTCTTGACAAGTTTCGTTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAAACATGTTGCCTCGTCATACGTTTTGATCTTCCGGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCGTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGACATAATTGATGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACATTCATCATCCCTGAGGAAAAAATTTTCAGAGTTGAGTCGACCGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTATTTCGTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATCTTCGGTGCACCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGCCTGAAAGCAATAGAAGAACTATATAAATTAGGTGCTTTAAGTAATTGTCTCTTGCCAAAGGAAGATGATGCAGAGCCAGAAGAACAGGTTTCTGGCCCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGGGAATTACAGGAGATGCTAGTTCCTTCTGCCTTTGGTCAGTCATGGACAAAAAAGGATGAAATCGTCCATCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGTGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATAGAAGCTGAGAAATTGGAACTTGATCTGCATCTTGCTCATGGTCGATCCGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTGCCGAGACTGTAGACTTGGGTATGGCTGCTGAATCTCAGACACACTCATCGACCTTCTACCTTTTGCTTCCGGTTGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGCCTCTGGTCACCAATCTTCAGGCATCCACAATATACTATGGACAAAAGAAAAATCCCTTTTGATACTCACCTGCAGCTTGCCAATGGTTACAAAAGTGTAAGAGATGTGGAGAATAGTTTAGTGTATGCACCACATAAAAGGACATTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCTTCATAAAGAATCAGGCACTTCAAGCTATGCGGATGACTTAATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAGCCGCTTCTGCATGTCAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGAAAGCGTGAAGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCCGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCCGAAGTTAGTGCCTTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCTTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTGGGCGCAATTTGCAGATCTATATATGCGATCAGATATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACTGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAGGAGCAAGGAAAAGTAACTGAAAACCGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAATTGCCTTTCTTACTTGGATTGGCATACAAGTTGGTTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTGGCTATTTCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTACATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAACCTGGTCAATTGACAGATTTGAGATCATTGTCGGTTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCTGTTTTGATAAATATCTTTTATGTGATTCAAATGGATTGTCTGAAGCGATAAAAAAGTATGTAGACTACGTTCGAAGTCCTTCAACAGATAGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACGTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGAAAATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCATCAAAACTGACTAAAACGTTTACAGTTGAAGCGAAAGCAAGTGGGAATAATGTATGTGAAACAGCATCAGCGACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCACTGATACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACTTATACCAATACTGCCAAGCATATAATGGTAACTGGAGACTTGTACAGCAAATCAAACTCAGAAATTCGACGAATCCCAGATACAGATGAAATATGCTCTCCATGCGTGAAACCTGTTGGTCAACTGCTTCAATCTTCTATGAGGGAAAAGCTCGGTGGAATATTTGAAAATCATTGCAGTAGTGAATCATCAGGGGCAGGAACTTCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGATCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGATCCCTGATACAATTTTAGAGTTTGTTGGTGAACCTCGATCAAAAAAGAAAGATGCTGCAGAGAGTGCGGCTCAGGGTGCATTTTGGTACCTGCAACAGAAAGGCTACTTTGCCTAG 4905 0.402 MPDGESSIVVDDQPSTDPSLSLSDQQLSLGLSQVELDDDDAVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKRRQDWEQEIGQYEVLVMTPQILLHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAEIMKIFYNSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSFVTTPVINIYHYASTASGETSMYLKIEEIKRQCIATLGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSVCDTYLAQVAELFTSQCIKGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVTVRSLSCILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNMILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEVTFRTSDETFIIPEEKIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFVDDSEGIVCHIRLPSNAPIHQIFGAPQLSMEASKRDACLKAIEELYKLGALSNCLLPKEDDAEPEEQVSGPTDEDECEDAISRGELQEMLVPSAFGQSWTKKDEIVHLNSYYIKFCPCPVDRVYKEFGLFIMARLPIEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAEKFQEMFLKIILDRLEFVAETVDLGMAAESQTHSSTFYLLLPVVLQEYGNAMKVDWKTVKRCLWSPIFRHPQYTMDKRKIPFDTHLQLANGYKSVRDVENSLVYAPHKRTFYFVTNIDYEKTGFSLHKESGTSSYADDLIEKFSIHLKYPEQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSAFRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSFHEGDLTKRRSNAVNNSNLLKLAIGRNLQIYICDQIFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTENRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIQVGFEASQVVDICIASAGYFPLSSDVDIPSLESKLGHQFLHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDKYLLCDSNGLSEAIKKYVDYVRSPSTDSGIKEGPKCPKALGDVVESCVGAILLDTGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVPSKLTKTFTVEAKASGNNVCETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTYTNTAKHIMVTGDLYSKSNSEIRRIPDTDEICSPCVKPVGQLLQSSMREKLGGIFENHCSSESSGAGTSRSRLYELCAAYCWKPPSFECCKEEGPDHLKQFTYKMTLEIEEIPDTILEFVGEPRSKKKDAAESAAQGAFWYLQQKGYFA* 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2349 1634 SUPERFAMILY dsRNA-binding domain-like 1337 1448 - -
Vra7g2349 1634 Gene3D Dicer dimerisation domain 575 671 IPR038248 -
Vra7g2349 1634 Gene3D - 1380 1459 - -
Vra7g2349 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1553 1629 IPR014720 -
Vra7g2349 1634 SUPERFAMILY PAZ domain 870 972 IPR036085 GO:0005515
Vra7g2349 1634 ProSiteProfiles PAZ domain profile. 874 974 IPR003100 GO:0005515
Vra7g2349 1634 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g2349 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1382 1450 IPR014720 -
Vra7g2349 1634 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1554 1628 - -
Vra7g2349 1634 SMART riboneu5 1226 1378 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 SMART riboneu5 1023 1190 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 SUPERFAMILY RNase III domain-like 1023 1184 IPR036389 GO:0004525|GO:0006396
Vra7g2349 1634 CDD RIBOc 1227 1377 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 CDD RIBOc 1024 1180 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 Gene3D paz domain 867 972 - -
Vra7g2349 1634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 558 IPR001650 -
Vra7g2349 1634 Pfam Type III restriction enzyme, res subunit 58 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vra7g2349 1634 ProSiteProfiles Ribonuclease III family domain profile. 1211 1355 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 669 IPR005034 GO:0016891
Vra7g2349 1634 ProSitePatterns Ribonuclease III family signature. 1246 1254 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 Gene3D Ribonuclease III domain 1209 1379 IPR036389 GO:0004525|GO:0006396
Vra7g2349 1634 SMART PAZ_2_a_3 852 1000 IPR003100 GO:0005515
Vra7g2349 1634 Pfam PAZ domain 873 995 IPR003100 GO:0005515
Vra7g2349 1634 Pfam Dicer dimerisation domain 579 663 - -
Vra7g2349 1634 SUPERFAMILY dsRNA-binding domain-like 1556 1631 - -
Vra7g2349 1634 Gene3D - 1560 1629 - -
Vra7g2349 1634 Pfam Helicase conserved C-terminal domain 407 513 IPR001650 -
Vra7g2349 1634 Gene3D - 388 549 IPR027417 -
Vra7g2349 1634 CDD DSRM_DCL_plant 1560 1629 - -
Vra7g2349 1634 MobiDBLite consensus disorder prediction 9 23 - -
Vra7g2349 1634 Gene3D - 48 285 IPR027417 -
Vra7g2349 1634 PANTHER DICER-LIKE PROTEIN 4 46 1631 - -
Vra7g2349 1634 PANTHER DICER-RELATED 46 1631 - -
Vra7g2349 1634 CDD DEXHc_dicer 48 247 - -
Vra7g2349 1634 SUPERFAMILY RNase III domain-like 1210 1374 IPR036389 GO:0004525|GO:0006396
Vra7g2349 1634 SMART helicmild6 425 515 IPR001650 -
Vra7g2349 1634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Vra7g2349 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 529 IPR027417 -
Vra7g2349 1634 ProSiteProfiles Ribonuclease III family domain profile. 988 1170 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 SMART ultradead3 46 251 IPR014001 -
Vra7g2349 1634 SMART DRBM_3 1383 1449 IPR014720 -
Vra7g2349 1634 SMART DRBM_3 1554 1628 IPR014720 -
Vra7g2349 1634 Pfam Ribonuclease III domain 1246 1355 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 Pfam Ribonuclease III domain 1039 1170 IPR000999 GO:0004525|GO:0006396
Vra7g2349 1634 Gene3D Ribonuclease III domain 1014 1181 IPR036389 GO:0004525|GO:0006396
Vra7g2349 1634 CDD DSRM_EIF2AK2-like 1381 1448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2349 Vra-Chr7 43591380 43610512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2349 413 512 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 1.12e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2349 K11592 - gmx:100818702 2812.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2349 7 43591380 43610512 Vra7g2349 7 43591380 43610512 ECH