Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2341 ATGGCGTTTGATCAGAATTCGGTTCCATTGGATCTTCGTCCGTTGAATGTGGCCGCCGCGATAGCGGAGGAGCCGATGATTTCGCCGGCCGCACTCACGCCGCCGACTCCTAATTCTGTCGGCGAGCTTTTCTACCAGCCGGCGGCCTCCGCCGGCACAACGTGGTGCGTCCGCCCCATTGCGCATGCCAACGTGAGCCCTGCCGCGGCGTATGGGTTTAACTACGGCGCTTCCAGCTTTGGCAGTCGCGTCGTGGCCGGGAATGCTTTGAGTTTGGGGAAGCTTGTGGGGTGTAATGGATTGGACAAGGCCTGCAATGATGCGAGTGGTTTTAGTTATGGTGTTGGCGGGGTCCGGGGCGGCAGAGTGGTCGGTAGTGGAAGCGATCACGGTGGCGGAGATGAGGGTGGTGGCGGCGGTGACGATTCGGTGTCCGGGAAGAAGGTGAAGTTTCTCTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGCCAAACAAGGATCATCAGTGTTAGGAAGGATGTGAGTTTCAATGATTTGGTGCAGAAGATGGTTGACACTTATGGGCAGGCTGTGGTTATTAAGTATCAGCTTCCTGAAGAGGATCTTGATGCCTTGGTGTCTGTGTCATGTCACGATGATATTGAGAATATGATGGAAGAGTATGATAAGTTGGTTGAGAGATCTTCTGACGGTTCTGCAAAACTAAGAGTTTTTCTGTTTTCTGTTTCGGAGACGGAAGTTTCTAGTGGGATGCAGTTGGGGGACTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGGATTGGTACGACAGATGCGATTGGGTTGGGTGGTGGGATCAATAGGAAGGAGAGTGTTACAAGTGCTGCTTCAACCCAGAATTCGGATTTGAGCGGGGCTGAGACTTTTGATAGTTCAATTACTGGTCAAGGGGATGTCACTGGGGTGCCCTTGTCATCACCTAAAGATTATGTGACAGCAGCTTCCTCCGACTCAAGTGCTAATATAGTGAGTTCAGAGGCCAGTGCACCGGCTTCGATACCAATGCCTGTGGCTAAGGCTAGTTCAACCCCATCCCACAACCCTTATTTTCAGAATGAGGTTGAGTTAGAAAGGTCTGTCCCTGTTGCTTTGCCCCAGCAGCCTTTTGGATTGCAGCAAGCTGGAATAGAAGTTCCATCCCCTGCACCTTATTATCAGACTTGTGTTGATCCTAGCCAGGAGGTTATGAACCATGCGGACTATGTGCAAGTTACTTCACAGATGAGGTTCACAAACCCTCAGCTTGTAGGAAAGACCGGGACTGTCTTGAGGCAACAACAGTTTCATGATAATACTCCCGGCTTAGCATTGCATCATCAGGTAATCCCCGGGGTACAAATGACTGTGGCCCCACAATCTTCTCACGCTGGTGTGAGACCGAATGTTATTCAACCACAACCGTTGGTGCAATCACAGCAACATCTTTTGGATCAATACCATGATGAAAATACATCAGGGGTAAGGATTATCCAGCTTCCTGCTGAACCTAGCTACAATGCTTACCAGGTTCCACCGAGTCAAGTATCACCTGTCATAGTTGGAGGTAATTATAGCTGGGTTCAGGTTCCTTCACAAGAGCGCGTTGTCATCTCGGATGGAGTATCACCCCAACAACAGGTAACGAGTCATGAGAAATTCCGAAGAATCGAGGACTGTTCTATGTGTCAGACAAAACTACCGCATGCACATTCTGATCCAGTAGTTCCGGATGAGCGTGGTAGTGGTGCAGGTTCTGTTCCTGATTCAACCCCAAGTCACTATAGCTTCCCAATGGAGGACAACATAAAAGCTCAAGCATCAAATATGATTATGCCAGTGGCGATGGCGCCGTTGAGGGAAGGCATTGCTGAACAAGGGGCTGGGATCAGACCCAGGGTCGTTGGCAAACTGGAACCTCCTGATGGAGTGCATCACACTGAGACCACTGGGCTTTCTCATAATACTGAGCCACAGCCGGAAGAATTTATTCATGCCGGGAATTCATTTTTCCAGGAAAAAATTGAATTGAAAGGTAGAAAACAATCTCCAAATGATGAGCACATGGGAACAGCAGCACTGTCTTATTTAGATGATGTTGGCCACCAACACATGGTACCAGTTGAAAACTGGGTTAAACAGGATGTGCTTATTAACAAACCTATGAATAATGATATGTCTATGGTCGATGGAACATCTATGCGAACTTCAGAGTGCATGGTTCAAGGATCTCCAAATGAATATACTAACGAACGTACTGGGGTTGTTTCTAAATCAGATGAGATACATAATTGGATTAGACAAGACCATCTAAAACCAATTGATGGAAGGATGGACACCTTCAAGATACAGAATTCTGATGCTTTTGTAAGTAATGACTACTCTTTTCTGCCAGCTGATAAACCCAGTGGGAATGATAATTTAGGTTACAGCACTCATAAATCTGTAGAGGGAGAGGTGATTCTGGATAACTTTGGCAGGTCAAAGTTGATAGTTGATGCAAATCAAAATAATATTGCAGCTGTGCTGCCTTGTTCTTCTTCATCATACAGGCAAAATTCCAGGTCAGGGGAACACAATGAGGCTACACAACCCCCTATTTGGGGCATTCCCGGCTCAAATCCTCAACCGAATATTGGAAACCCCCATACCGAAGACGCTGCACTATCTTCATCATCTCCATCCGTCAGGTTTGGAGATGTGCAGGATACTCCGAACTCACTGTTCAGTAATCAGGATCCATGGAATATACAGCATGGTACCTTCTTTCCACCTGGTAGACAAAGCAAAGCTGCATTGAAGAAAGAAACCTTTTCTTGCCAGGATCCCTTTGCTGAGGATACTGGTAGCTTTGGGGAACAAAGTTTAGAAGCACAATTGGATGATAGCCTCTATCAGTCGTTCAAACAAAATTTAACTTTAGAACATAGTCGGTCAGCCAAAGGTTCAGCAGAAGACCAACAACTCCAAGCTGTTGCGGAGAATGTAGCTGCCTCTGTTTTGCACTCAAGAAATCCTTCAAATTCTGACTTGCATTCCACAGATGTTTCCTGCTGTGATAACATTGAGGATGACAGTGTTCAAAATAATTTTATGGATGTAAAGTGTGGACATACAACTCAGGAGGTCTGGAGCAGGCAACTAGAAAAAACAAATTGTGGCATTCTAGCATCAGGTTTTGGAAAATTACAGGTGATAAAGAACTGTGATCTTGAAGAACAGACAGAACTTGGTTCTGGTACGTTTGGGACCGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGCATTACTGATAGATGTTTTGCTGGAAAGCCTTCGGAGCAAGAGCGCATGAGAAATGACTTCTGGAATGAGGCAATCAAGCTAGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGCTTGATGGCCCCGGGGGTTCTGTGGCAACAGTTACTGAATATATGGTTAATGGTTCCTTAAAAAATGCCTTGCAGAAGAGTGACAGGAATCTTGAAAAGCGCAAGCGACTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACTTACATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTTAATCTCCGAGATCCACACCGACCAATATGCAAGGTTGGAGACTTGGGTCTGTCCAAAGTAAAATGTCAGACACTGATCTCTGGTGGGGTGAGAGGAACTCTGCCGTGGATGGCTCCAGAACTGCTTAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGACGTATTTTCATTTGGCATTGTGATGTGGGAACTCTTGACCGGATTGGAGCCCTACGCTGACTTGCACTATGGTGCTATTATTGGTGGTATAGTGAGCAACACTTTACGCCCTCCTATTCCAGAACATTGTGATCCAGAATGGACATTGTTGATGGAGAGGTGCTGGTCATCAGAGCCATCCGAGAGACCAAACTTCACTGAGATTGCCAGTGAATTGCGATCTATAGCGGCCAAAATCTCTCCCAAAGCACAGAACTCTCCCAAAGGACAAATCCAACAGCTGCAACACTCTCCAGTGCAAACTCAACTCAACAAATGA 4158 0.4644 MAFDQNSVPLDLRPLNVAAAIAEEPMISPAALTPPTPNSVGELFYQPAASAGTTWCVRPIAHANVSPAAAYGFNYGASSFGSRVVAGNALSLGKLVGCNGLDKACNDASGFSYGVGGVRGGRVVGSGSDHGGGDEGGGGGDDSVSGKKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQAVVIKYQLPEEDLDALVSVSCHDDIENMMEEYDKLVERSSDGSAKLRVFLFSVSETEVSSGMQLGDLQDTGQKYFDAVNGIGTTDAIGLGGGINRKESVTSAASTQNSDLSGAETFDSSITGQGDVTGVPLSSPKDYVTAASSDSSANIVSSEASAPASIPMPVAKASSTPSHNPYFQNEVELERSVPVALPQQPFGLQQAGIEVPSPAPYYQTCVDPSQEVMNHADYVQVTSQMRFTNPQLVGKTGTVLRQQQFHDNTPGLALHHQVIPGVQMTVAPQSSHAGVRPNVIQPQPLVQSQQHLLDQYHDENTSGVRIIQLPAEPSYNAYQVPPSQVSPVIVGGNYSWVQVPSQERVVISDGVSPQQQVTSHEKFRRIEDCSMCQTKLPHAHSDPVVPDERGSGAGSVPDSTPSHYSFPMEDNIKAQASNMIMPVAMAPLREGIAEQGAGIRPRVVGKLEPPDGVHHTETTGLSHNTEPQPEEFIHAGNSFFQEKIELKGRKQSPNDEHMGTAALSYLDDVGHQHMVPVENWVKQDVLINKPMNNDMSMVDGTSMRTSECMVQGSPNEYTNERTGVVSKSDEIHNWIRQDHLKPIDGRMDTFKIQNSDAFVSNDYSFLPADKPSGNDNLGYSTHKSVEGEVILDNFGRSKLIVDANQNNIAAVLPCSSSSYRQNSRSGEHNEATQPPIWGIPGSNPQPNIGNPHTEDAALSSSSPSVRFGDVQDTPNSLFSNQDPWNIQHGTFFPPGRQSKAALKKETFSCQDPFAEDTGSFGEQSLEAQLDDSLYQSFKQNLTLEHSRSAKGSAEDQQLQAVAENVAASVLHSRNPSNSDLHSTDVSCCDNIEDDSVQNNFMDVKCGHTTQEVWSRQLEKTNCGILASGFGKLQVIKNCDLEEQTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRNDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLKNALQKSDRNLEKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGLEPYADLHYGAIIGGIVSNTLRPPIPEHCDPEWTLLMERCWSSEPSERPNFTEIASELRSIAAKISPKAQNSPKGQIQQLQHSPVQTQLNK* 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2341 1385 MobiDBLite consensus disorder prediction 587 613 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 1359 1385 - -
Vra7g2341 1385 Pfam Protein tyrosine and serine/threonine kinase 1090 1352 IPR001245 GO:0004672|GO:0006468
Vra7g2341 1385 MobiDBLite consensus disorder prediction 657 676 - -
Vra7g2341 1385 CDD STKc_MAP3K-like 1095 1352 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 299 327 - -
Vra7g2341 1385 Gene3D Transferase(Phosphotransferase) domain 1 1177 1385 - -
Vra7g2341 1385 Gene3D Phosphorylase Kinase; domain 1 1082 1176 - -
Vra7g2341 1385 SMART PB1_new 163 252 IPR000270 GO:0005515
Vra7g2341 1385 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 127 908 - -
Vra7g2341 1385 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 906 1359 - -
Vra7g2341 1385 Pfam PB1 domain 168 251 IPR000270 GO:0005515
Vra7g2341 1385 CDD PB1_UP2 152 250 - -
Vra7g2341 1385 ProSitePatterns Protein kinases ATP-binding region signature. 1095 1126 IPR017441 GO:0005524
Vra7g2341 1385 SUPERFAMILY Protein kinase-like (PK-like) 1083 1350 IPR011009 -
Vra7g2341 1385 Gene3D - 169 252 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 866 913 - -
Vra7g2341 1385 SMART serkin_6 1089 1355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2341 1385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1214 1226 IPR008271 GO:0004672|GO:0006468
Vra7g2341 1385 SUPERFAMILY CAD & PB1 domains 164 255 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 892 913 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 124 143 - -
Vra7g2341 1385 PRINTS Tyrosine kinase catalytic domain signature 1171 1184 IPR001245 GO:0004672|GO:0006468
Vra7g2341 1385 PRINTS Tyrosine kinase catalytic domain signature 1208 1226 IPR001245 GO:0004672|GO:0006468
Vra7g2341 1385 PRINTS Tyrosine kinase catalytic domain signature 1279 1301 IPR001245 GO:0004672|GO:0006468
Vra7g2341 1385 PRINTS Tyrosine kinase catalytic domain signature 1323 1345 IPR001245 GO:0004672|GO:0006468
Vra7g2341 1385 ProSiteProfiles Protein kinase domain profile. 1089 1355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2341 1385 PANTHER SERINE-THREONINE PROTEIN KINASE 127 908 - -
Vra7g2341 1385 PANTHER SERINE-THREONINE PROTEIN KINASE 906 1359 - -
Vra7g2341 1385 MobiDBLite consensus disorder prediction 299 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2341 Vra-Chr7 43506885 43514654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2341 147 627 MAP Kinase Kinase Kinase AT3G46920 40.862 4.84e-88 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vra7g2341 PK_Tyr_Ser-Thr 1.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2341 - - gmx:100819234 1964.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2341 7 43506885 43514654 Vra7g2341 7 43506885 43514654 ECH
Vra7g2341 7 43506885 43514654 Vra5g0402 5 4171133 4178897 PCT