Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2338 ATGGGTTCCTCCTCTAGTAGACCTGCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGATATGAGAANCGAATTCCATGGGAATACTAGTGCTGGAAGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGGACTGCTTGTCTGAACACGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTGGTTAGAGGTGGTGTCTCTCAAGTCTCTCACGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGTCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTAGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCCGATGCCAATGATCATGACGCGAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGACTCTCCAACCATTGTCTTCTCTACTGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGAGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGTTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCTCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCCGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCACTGTCTCTATCTATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAATGGCTGATGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGCCGTGGCAATGTCTGTGGAGGGTTCACTGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA 1623 0.4455 MGSSSSRPATRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSSDMRXEFHGNTSAGSSYRNVATQSQRDCLSEHEEQAPPCQVSAGHSGRESYSDSSNTASTSFVAQQSSDPVSVNVSANKDVVNDVNNPVVRGGVSQVSHETVHQRSSSPQEHVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2338 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Vra7g2338 540 MobiDBLite consensus disorder prediction 78 152 - -
Vra7g2338 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Vra7g2338 540 SMART ring_2 479 520 IPR001841 -
Vra7g2338 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
Vra7g2338 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 525 IPR013083 -
Vra7g2338 540 MobiDBLite consensus disorder prediction 132 152 - -
Vra7g2338 540 SUPERFAMILY RING/U-box 469 524 - -
Vra7g2338 540 MobiDBLite consensus disorder prediction 187 206 - -
Vra7g2338 540 MobiDBLite consensus disorder prediction 227 247 - -
Vra7g2338 540 Pfam Ring finger domain 478 521 IPR001841 -
Vra7g2338 540 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2338 Vra-Chr7 43489086 43492372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2338 390 525 C3H Transcription Factor Family AT5G45290 52.980 9.56e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2338 - - vun:114178267 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2338 7 43489086 43492372 Vra7g2338 7 43489086 43492372 ECH