Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2336 ATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAGAACGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCAGATGGACAACAGGGAAAAAGACTCTTCCTTTAGAACCCCCACTGACCAGATCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGAATACAGAAACTGTGGACAAAAAGCAGAACCTGATGAACTTTGTTCCTACTCTTCGGTCTGGTGAGTGGAGTGATATTGGAGAACGCCCTTCCATGGAAGATACACACATATGCATTGGAGATTTGGCCAAAAAATTTGGCAATAACGTACTTTCTGAAGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACACTTTGTTCGTGATCATCTACCACAGGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCATGTTCTATTGAGTCTTCCCTATCTTCTGGCACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCCGGAGACTGTCGTGCTGTGTTATCCCGTGGCGGCCGAGCCGTAGAAATGTCCAAAGATCACAGACCATTGTGCATGAAAGAAAAGATGAGGATTGAGTCTGTAGGTGGATACATAGATGATGGTTACCTGAATGGGCAATTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAACATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTTTTGATAATTGGGAGCGATGGAATATGGGATGTTTTTCGCAGCCAGAATGCAGTGGACTTTGCTCGAAGGAGGCTGCAAGAACACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGAGAAGCAATAAAGAGAGAAGCAACAGACAACTTGACAGTGGTGATGGTGTGTTTTCACTCAGAACCACCACCTCCTGTGGTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAATCTTAAATGCTTGCTAGAAGGATAA 1146 0.4372 MCVQEGEQVGEDIEKNVDNRRVSWPLHCDLLHAQMDNREKDSSFRTPTDQISVANSFPLESICENTETVDKKQNLMNFVPTLRSGEWSDIGERPSMEDTHICIGDLAKKFGNNVLSEEAISFYGVFDGHGGKSAAHFVRDHLPQVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAVEMSKDHRPLCMKEKMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKREATDNLTVVMVCFHSEPPPPVVVERPRVRRSISAEGLQNLKCLLEG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2336 381 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 369 - -
Vra7g2336 381 SUPERFAMILY PP2C-like 74 350 IPR036457 -
Vra7g2336 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Vra7g2336 381 Gene3D - 63 352 IPR036457 -
Vra7g2336 381 CDD PP2Cc 83 348 IPR001932 -
Vra7g2336 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Vra7g2336 381 PANTHER PROTEIN PHOSPHATASE 2C 1 369 IPR015655 GO:0004722|GO:0006470
Vra7g2336 381 Pfam Protein phosphatase 2C 93 340 IPR001932 -
Vra7g2336 381 SMART PP2C_4 73 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2336 Vra-Chr7 43472059 43475361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2336 45 381 PP2C-type Phosphatase Gene Family AT2G25620 57.185 1.24e-136 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vra7g2336 PP2C 1.4e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2336 K14803 - gmx:100782648 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2336 7 43472059 43475361 Vra7g2336 7 43472059 43475361 ECH