Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2335 ATGGCTGAACAAACCGAGAAGGCGTTTTTGAAGCAACCAAAGGTGTTCCTCTGCTCGAAGAAAACTGGGAAGGGGAAGAGACCCGGGAAAGGTGGAAATCGCTTTTGGAAATCCATTGGACTTGGATTTAAGACTCCCAGAGATGCCATCGAAGGGACCTACATCGACAAGAAGTGCCCCTTCACTGGCAATGTCTCTATTCGTGGTCGTATCCTTGCCGGAACATGTCATAGTGCTAAGATGAATAGGACTATTATTGTTAGGAGGAATTATCTCCATTTTATTAAGAAGTATCAGAGGTATGAGAAGAGGCACTCCAATATTCCTGCTCACATATCACCTTGCTTCCGCGTGAAGGAAGGTGATCATGTCATAATTGGTCAATGCAGGCCACTCTCCAAGACGGTGAGGTTCAATGTGTTGAAGGTGATTCCTGCGGGGTCTTCTAGCGGTGCGAAGAAGGCATTTACTGGAATGTGA 480 0.4625 MAEQTEKAFLKQPKVFLCSKKTGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2335 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Vra7g2335 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 TIGRFAM uS17_arch: ribosomal protein uS17 55 143 IPR028333 -
Vra7g2335 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Vra7g2335 159 PANTHER OS04G0502300 PROTEIN 1 159 - -
Vra7g2335 159 Gene3D - 1 158 - -
Vra7g2335 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2335 Vra-Chr7 43462778 43464351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2335 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.308 2.88e-97 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2335 K02949 - gmx:100500186 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2335 7 43462778 43464351 Vra7g2335 7 43462778 43464351 ECH