Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2334 ATGTGTGCTGATAAGAAACTAGTTGAACTGTGTGACCTAAGAAGAGTATTACGTGGTACGTGGAGAATGGGAAGTAATAGCACTGAAAAGATCCCAATCAATAACAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAGATTGCTTCTGTAACTGGGGTATTATCTGAACGGCAACGCCTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCTGCGTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGCGAGGCAACCCGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTGACAGGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGAGTTGCACCTGAAATCAATAGGATCGTTTCTGCAGTTCTAGGATCCATTGGACTTCAAAATTTTGCGAGTGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCTCTGGGAGAATTTCAGGCTCTAGTGGAATATTTGATTCATCTCATCCTCAACCCGAACAATCGGGTTTTCGGGTTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGCGACAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCTCAATATTTAAGTCACATAAGCAATGAATTTGATGCAATTGTGAGAGAAGGGGGGAATATTGCCCAAGCAGACGAGGCTCAAAGGAATGTAGAAACTAGACCTATTTCTTCACGTTCGGCTTCAGCTCTAGAAGGGTTTTCATCTCCCACATTGTTGGCAGAGGTTCTGCTTTCTACCAGACGAATGATTGTTGAACAAGCAGGCGAATGCCTACTTCAATTATCAAGGCAGATGGAGAATCAAGCTGATGTAACCGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGGACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTCGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGAGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAAACTGGAACAAGCTTTGGCGCTGTTCCTGTTGGAGCTGCACAGTCTAGCTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTGCCTCATCAACATCATCCAATACCAATCAGGAAGAACGCAATGATACACAACCTGCTTCGGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCTTCTTTTTCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTACCGGGTCCTGTGGTCCGTCCGCCTTCAGAATCATCTGGTAATTCTGTAGGTCTTTACTATCCAATTCTTGGGAGATTTCAACACGTGTCTTCGGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCAGTACCATCAACTACTGATTCCATGTTGGAAAGGCAAAGCACAGATGATTCTACAAGAAATGTAGGATCCTTATCAACTCAAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGGCTGCCAGTGGACCCCAAAACAACCAAGAACCTGAACGGCAAGTACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAATAACTGCAGGTTCTGACTCAGATCATGCTGCAACATCAAGGGGGGCTGCCCAAGTCCCCGAAGCACAACCTAATGCCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGGAAATCCTTCTGAAGATCATATGGCTCAAGCTTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACCAAGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2229 0.4468 MCADKKLVELCDLRRVLRGTWRMGSNSTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSLPNHSVTEPNSSSSLTGLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGSGRISGSSGIFDSSHPQPEQSGFRVLSDRSRNAFGAPATVSLGSLQPPVIPDSLTTLSQYLSHISNEFDAIVREGGNIAQADEAQRNVETRPISSRSASALEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQMENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQTGTSFGAVPVGAAQSSSSLGSGLGSSFFPRRIDIQIRRGASSTSSNTNQEERNDTQPASVQRNPGENPVNQATSRRPDASFSGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSVGLYYPILGRFQHVSSGHVNSEQRSQHSSQHHAAVPSTTDSMLERQSTDDSTRNVGSLSTQSTRPEPSNSRVVNINILAASGPQNNQEPERQVPSSVLQLLRSLFPGGEIHVEDSSVQGITAGSDSDHAATSRGAAQVPEAQPNASEEGIFLSNMLREIMPVISQQVGSEGNPSEDHMAQASSTQVETDVGTSRRPSDSDSSPPNPKRQKME* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2334 742 MobiDBLite consensus disorder prediction 193 224 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 453 493 - -
Vra7g2334 742 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 23 742 - -
Vra7g2334 742 PRINTS Ubiquitin signature 54 74 IPR019956 -
Vra7g2334 742 PRINTS Ubiquitin signature 75 95 IPR019956 -
Vra7g2334 742 PRINTS Ubiquitin signature 96 117 IPR019956 -
Vra7g2334 742 MobiDBLite consensus disorder prediction 453 501 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 201 224 - -
Vra7g2334 742 SMART ubq_7 44 115 IPR000626 GO:0005515
Vra7g2334 742 Pfam Ubiquitin family 46 116 IPR000626 GO:0005515
Vra7g2334 742 Gene3D - 36 127 - -
Vra7g2334 742 ProSiteProfiles Ubiquitin domain profile. 44 119 IPR000626 GO:0005515
Vra7g2334 742 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 23 742 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 128 143 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 649 675 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 547 600 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 694 742 - -
Vra7g2334 742 SUPERFAMILY Ubiquitin-like 39 123 IPR029071 -
Vra7g2334 742 MobiDBLite consensus disorder prediction 695 734 - -
Vra7g2334 742 MobiDBLite consensus disorder prediction 114 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2334 Vra-Chr7 43443299 43460268 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2334 44 115 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.84e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2334 K23390 - gmx:100783070 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2334 7 43443299 43460268 Vra7g2334 7 43443299 43460268 ECH