Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2320 ATGAGAAAGAAAACAAAGCAAGTAGGAGAAGTAAGGGACGATAGTAAAATGGGAGATAGCAGTCCCAAAGCATATGATAATGATACTATGGTGTTCATTTCCATGTCTCAAGAATTGAAGAATGAGGGAAACAAGCTGTTCCAGAAGAGGGATGTTGAAGGAGCAATACTAAAATATGAGAAAGCCCTGAAGTTACTTCCGAGAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGCTATATGCAGATGGGGGTCAGTGAGTTCCCAAAGGCTATTCATGAATGTGATTTGGCTCTTGAAGTGACACCCAAATATAGTAAAGCACTGTTGAAGAGAGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAGCACTGTTCTAAAGATGGAACCAAATAATGTCATAGCATTAGAGATCTCAGAAAAGGTGAAAAATGCACTTGAGGAGAAAGGATCGAGAGTTAACGATACAATAATTGAGTTGCCTCCAAATTATGTCGAACCTCCTAGTCCTTTGACTCCAGAAAAGATAGTGAAAGAGAATATGCGCAAGAATAAGGGCTATACGGAGGAAAAGAAGGCTCCTAATGACAAACTTCTAGAAAGGAAAACTGAGGAGAAGAAGACTGAGGACAGCATTGTGGTTGTTGAGAAGAAGACCAACACATCCAAGAAGAAGAAGGCCAAGGAAAAGAATGATGAGAAGAAGGCTGATATAAAGGAGGTTATAGAGGAAGGAAGTAATGGTAGAAAGGAACATGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTTCCTATCAATTGTAGCCTCTTCCAGTTAAGAGAAGTTATTCAAGATCGATTCTCGAGCCTAGGAGCTGCTCTTGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGAACGGCTGAAATAGGATCTCATAGTTGTATCAGACTGTACATAGTAGAAGCCACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGGGGAAGTTGTTGGCATTAACATTGCAGTTGAGAATGGCTGTGTGGGAAAAGCAAATGGAATTGATAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCAAAATTGTTCAAGAACCATGTTGGTTTTGAGTGTGACAGATATTTGGATTTTCACGAACATGGTATGAAGCTATATTCCGAGGCTATGGAGGAGACAATTACAGGCGAAGAAGCACAAGGCCTATTTGACATGGCTAGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTTCATATGTCTAAGGCAAGGAAAAAGATATATAAAACAGAAGACTCTTCTAAAGACCATCTATGCGAACTGATCAAGAGTTCATATGAATGGACGCTGGAAGAGTATTCAAAGGCAGAAGAAAAATATGATGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGATTTTTGGCTCTGGGGCTACAGAAGTTTGAGCAAGCAAAACTCTTGTGGTATTATGCACTCAATAGTAATGTAGACTCATTAACATGGCCTTCCGCTGAGGTTCTCCATCTTTACAACAATGCTGAAGAAAATATGGAGAAAGGAATGCATATATGGGAAGAATCTGAAAAGCAGAACTTGAGTAAAATGTCTGATTCAAATTATTCTATATTGGATTTGCAGAACATGGGGTTGGATGGGGTTTTTGAAAGTATGTCCTCAGAAGATCTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATTCTCTACGAACGCTCAATTGTGGAGTTCAAATCAGGGCTACCTATGTGGCATGAAACTCTTGCGGCTTCAGTTGAGAAATTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAATCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAAGGAGATGTACAAAGCTAAAATGTGGAAGAGTGGATTTCCATCATTTCGTTTGGAAGCCTTATTCAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2163 0.393 MRKKTKQVGEVRDDSKMGDSSPKAYDNDTMVFISMSQELKNEGNKLFQKRDVEGAILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGVSEFPKAIHECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVLKMEPNNVIALEISEKVKNALEEKGSRVNDTIIELPPNYVEPPSPLTPEKIVKENMRKNKGYTEEKKAPNDKLLERKTEEKKTEDSIVVVEKKTNTSKKKKAKEKNDEKKADIKEVIEEGSNGRKEHVPNKTVKLIFGDDIRCAELPINCSLFQLREVIQDRFSSLGAALVKYRDQEGDLVTITSDDELRTAEIGSHSCIRLYIVEATPEQDPLFEKFKVKEGEVVGINIAVENGCVGKANGIDSSSCIEDWIIQFAKLFKNHVGFECDRYLDFHEHGMKLYSEAMEETITGEEAQGLFDMARDKFQEMTALALFNWGNVHMSKARKKIYKTEDSSKDHLCELIKSSYEWTLEEYSKAEEKYDAAIKIKSDFYEGFLALGLQKFEQAKLLWYYALNSNVDSLTWPSAEVLHLYNNAEENMEKGMHIWEESEKQNLSKMSDSNYSILDLQNMGLDGVFESMSSEDLAAQEAHMRSQINLLWGTILYERSIVEFKSGLPMWHETLAASVEKFELAGASPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWKEMYKAKMWKSGFPSFRLEALFRRRVSKTYHAFELA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2320 720 Pfam PB1 domain 268 340 IPR000270 GO:0005515
Vra7g2320 720 SUPERFAMILY CAD & PB1 domains 266 349 - -
Vra7g2320 720 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Vra7g2320 720 Coils Coil 235 255 - -
Vra7g2320 720 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vra7g2320 720 Gene3D - 266 346 - -
Vra7g2320 720 SMART tpr_5 110 143 IPR019734 GO:0005515
Vra7g2320 720 SMART tpr_5 36 69 IPR019734 GO:0005515
Vra7g2320 720 SMART tpr_5 475 508 IPR019734 GO:0005515
Vra7g2320 720 SMART tpr_5 74 109 IPR019734 GO:0005515
Vra7g2320 720 SMART PB1_new 266 343 IPR000270 GO:0005515
Vra7g2320 720 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g2320 720 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Vra7g2320 720 PANTHER PROTEIN PHOX3 5 719 - -
Vra7g2320 720 PANTHER PROTEIN CLMP1 5 719 IPR044517 -
Vra7g2320 720 MobiDBLite consensus disorder prediction 190 215 - -
Vra7g2320 720 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g2320 720 SUPERFAMILY TPR-like 36 149 IPR011990 GO:0005515
Vra7g2320 720 CDD PB1 268 340 - -
Vra7g2320 720 ProSiteProfiles PB1 domain profile. 266 343 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2320 Vra-Chr7 43296016 43300567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2320 19 143 Calmodulin-binding Proteins AT3G25230 30.216 2.84e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2320 - - gmx:100807387 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2320 7 43296016 43300567 Vra7g2320 7 43296016 43300567 ECH
Vra7g2320 7 43296016 43300567 Vra5g0428 5 4476594 4484734 PCT