Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2300 ATGTCAACAAACCACCTCAGGAATGGAGACGCCGAACCTCTCCTTCGTCAAACTCTACTTTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCAATCGAGAGCCTCGATTATGAGATGTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGACAGGTTCAGATATTTCAGTACATTTTTATGAAATGGCTCTTGTGCTTTCTCGTTGGCATGATCGTTAGCCTTATTGGTTTCTGCAACAATCTCGCGGTGGAGAATCTCGCTGGCATCAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAGGAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGGTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTTATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGATGCACCTGGAATATTTACTGTGCAAACTCTTGTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCAGCATTATTAGGTCAGGGTGGGTCAAAGAGATACGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGTGCCCCTGTTGGTGGTGTGTTGTTTGCTCTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCTGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCGGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATCTCCATTTGTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTTACGTCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGACGAGTTTGAGTTTACATCAATGCTAATATTTTTCGTTACATGCTTTTTGTTAAGTATCTTTAGTTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCATCGTTGGAATGCTGCTTGGCAAAAACTCCGATCTTAACCATGGTCTTTTTGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGAACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTACTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGGAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCAGAAGCTCCGGTGTTATTTGGCATAATCCTCCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAACTTTGCAGCCAATGATTTTGCAAAGAAGGGTTCAAGCAAAGTTCGTCTGAGGATAGAAGATATAGAGTTGTTGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTCTGGTAAGAAAAGCTGGGAAAATACTAAGATTTTAG 2301 0.4255 MSTNHLRNGDAEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEMFENEFFKQDWRSRGQVQIFQYIFMKWLLCFLVGMIVSLIGFCNNLAVENLAGIKFVVTSNMMLERRFQLAFFIFFVSNLGLTLFASLITAFIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLVVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSCLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFTSMLIFFVTCFLLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKNSDLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNGNIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPVLFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFAANDFAKKGSSKVRLRIEDIELLEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLVRKAGKILRF* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2300 766 Pfam CBS domain 696 745 IPR000644 -
Vra7g2300 766 Gene3D Clc chloride channel 68 566 - -
Vra7g2300 766 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 12 759 - -
Vra7g2300 766 SUPERFAMILY CBS-domain pair 569 745 IPR046342 -
Vra7g2300 766 PANTHER CHLORIDE CHANNEL PROTEIN 12 759 - -
Vra7g2300 766 Gene3D - 567 747 IPR046342 -
Vra7g2300 766 SUPERFAMILY Clc chloride channel 54 568 IPR014743 -
Vra7g2300 766 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra7g2300 766 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra7g2300 766 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra7g2300 766 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra7g2300 766 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra7g2300 766 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 747 - -
Vra7g2300 766 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra7g2300 766 ProSiteProfiles CBS domain profile. 695 755 IPR000644 -
Vra7g2300 766 SMART cbs_1 586 639 IPR000644 -
Vra7g2300 766 SMART cbs_1 698 749 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2300 Vra-Chr7 43100280 43105320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2300 8 765 Ion Channels AT5G33280 73.879 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2300 K05016 - gmx:100817901 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2300 7 43100280 43105320 Vra7g2300 7 43100280 43105320 ECH