Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2299 ATGGCCATTTCTGCGTTATTCTTGGTTGTGCTGCTGCAATTGTCAACAATTTTTGGCTCGGAGGTTGTCTTACAGTCAAAGGAATGTGGCACTGATTGGGTGGCACATTCACATGCTAGTCATGGTCAGGAACTTTTCTACATAAACGGCAATGTAGTGGACAAGGTTGCTTTCTGTGAGTCTCTCCAATCGTATACTGAAAAGGGGTGTGATGTGAACGACTACTTTGGAAGTGTTAAATGTGTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAAGGCAGGGAGGAAACTTCTTAAAAAGGATTCAAATACCGAATCTAAACCGCAAGGAGATTCTAAGCCTATCCCAGTCCACGTGGTTGGTATTTCTGCAGGGGGAGCTCTGTTTGCATGTTGTCTTGTTCTTTGTCCTTGTTTCTTTAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGAGCAAGGACCCCAATTCAATGGATTCCGTTTCCTCCTTTGAAGCCTCCGTTAATGACAAGATTCCGGCCAGTCCACTACGAGTGCCAGCTAGTCCGTCAAGATTCTCAATGTATCCAAAACTCAGTAGACTTCAATCATTGCATCTTGATCTGAACCAAGTTACAAGAGCTACTCATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAATTGGAAGATGGTCTGGTCGTGGCTGTAAAACGTGCGAAAAAGGAACATTTTGATAGTTTGAGAGCAGAATTCAGCAGTGAAGTTCAACTTTTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGCATGCGTGGAAAAACACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTACATCTGTATGCAGAAAAGCAAATTATCCATCGAGACGTGAAATCATCCAACATTCTGCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAAGCTAGGGCCTGTAAACACTGATGAGACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTATTCGTTTGGAATTTTGCTTTTAGAAATTGTGTCTGGCCGCCGTCCCGTTGAGTTGAAGAAATCTGTTGAAGAGCGTGTTACACTTAGATGGGCCTTCAAGAAGTACAACGAAGGAAGTGTAGTGGAACTGGTGGATCCTTTAATGGAAGAAGCAGTAAACACAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCATTCGAGCAGATAGACCTGACATGAAATCGGTGAGCGAGCAGTTGTGGGCAATAAGGGCAGCTTACCTCAAGAGTGCAAGGAGAACATGA 1500 0.426 MAISALFLVVLLQLSTIFGSEVVLQSKECGTDWVAHSHASHGQELFYINGNVVDKVAFCESLQSYTEKGCDVNDYFGSVKCVTDVSFVDFPLKAGRKLLKKDSNTESKPQGDSKPIPVHVVGISAGGALFACCLVLCPCFFKRRKATSHAVLSKDPNSMDSVSSFEASVNDKIPASPLRVPASPSRFSMYPKLSRLQSLHLDLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRAEFSSEVQLLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKTLDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNTDETHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVSGRRPVELKKSVEERVTLRWAFKKYNEGSVVELVDPLMEEAVNTDVLMKMFDLAFQCAAPIRADRPDMKSVSEQLWAIRAAYLKSARRT* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2299 499 Gene3D Transferase(Phosphotransferase) domain 1 290 498 - -
Vra7g2299 499 ProSiteProfiles Protein kinase domain profile. 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2299 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Vra7g2299 499 SUPERFAMILY Protein kinase-like (PK-like) 195 488 IPR011009 -
Vra7g2299 499 PANTHER OS07G0166700 PROTEIN 6 498 IPR045272 GO:0004714|GO:0006468
Vra7g2299 499 Pfam Protein tyrosine and serine/threonine kinase 218 485 IPR001245 GO:0004672|GO:0006468
Vra7g2299 499 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 6 498 - -
Vra7g2299 499 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Vra7g2299 499 CDD STKc_IRAK 219 485 - -
Vra7g2299 499 SMART serkin_6 213 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2299 499 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2299 Vra-Chr7 43092700 43100171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2299 198 491 Receptor kinase-like Gene Family AT5G59700 46.780 4.52e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vra7g2299 PK_Tyr_Ser-Thr 2.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2299 - - gmx:100798260 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2299 7 43092700 43100171 Vra7g2299 7 43092700 43100171 ECH