Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2280 ATGAAAGTTGTGAGCATGGAGACAGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGTGTTAGAGCAACCGAGACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCCTTGAAGCTCGATTATCTTCTGATAACCCTGATCCCCCACCCCAGGAGAACAAGGCTGCATGCCAGCTCCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATTCTAACCTTGTGAAACTTATCGGATACTGCATTGAAGATGATCAGCGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTCCCGTGGCCCAACAGGGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCACAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCTAATATTTTGCTTGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACTGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGTCCGAGTGGAGAGCAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGCCTGGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAGCTGCCTCAGCAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTGACTCCATTGCAGGGGCTTAATGACCTTGCAATTTTGTCTTATCACTCTCGCTTGTCTCAACAAGGGAGACGGAAGAAGAAAGATGGAACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCTTTGAATACCAGCAAGCAGCATCGGTGA 1233 0.4526 MKVVSMETEKKCGCWAVLKRGVRATETRYLNASNRELCPPLEARLSSDNPDPPPQENKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHSNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWPNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQGLNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2280 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vra7g2280 410 SUPERFAMILY Protein kinase-like (PK-like) 62 358 IPR011009 -
Vra7g2280 410 Gene3D Phosphorylase Kinase; domain 1 54 163 - -
Vra7g2280 410 CDD STKc_IRAK 84 360 - -
Vra7g2280 410 ProSiteProfiles Protein kinase domain profile. 78 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2280 410 MobiDBLite consensus disorder prediction 390 410 - -
Vra7g2280 410 MobiDBLite consensus disorder prediction 374 410 - -
Vra7g2280 410 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Vra7g2280 410 PANTHER OS01G0588500 PROTEIN 55 381 - -
Vra7g2280 410 PANTHER OS01G0588500 PROTEIN-RELATED 55 381 - -
Vra7g2280 410 ProSitePatterns Protein kinases ATP-binding region signature. 84 116 IPR017441 GO:0005524
Vra7g2280 410 Gene3D Transferase(Phosphotransferase) domain 1 164 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2280 Vra-Chr7 42828839 42832758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2280 57 357 Glycoside Hydrolase AT3G07070 55.410 4.16e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g2280 PK_Tyr_Ser-Thr 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2280 - - gmx:100305441 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2280 7 42828839 42832758 Vra7g2280 7 42828839 42832758 ECH