Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2277 ATGGAGCTTCAACTTGGTCTTGCTCTCTCAACCAATCAATCTCAATCACTTGACCTCAATTCTCATGCCTATGATTCTATCTTTCATGTCCATCAAAATAATTCCAATAAAAAACGTACCTTCTTCCAACTCTTTGATCTTGCACCACAAACTCTCCACACCGACCTTGTACTTCCCACGCTGTCTCTCCTTCCTTTGACGCCAAGCCACCATCAAGATGATCATGATCAACATAGTCAATGCTCTAGCATCACCAAAAAGGATGAAGAGGATGCAGAAAATATAGTGGGTTGGCCACCGGTAAACTATTGGAGGAAGAAACTTCGTGTCGACCATGACGAGGTTGCAGGAAAAAACGATCACGTGGTATGGGTTGACCGGTGTCACAGTCATGGTTCCAATTCTTCAAAGTCTCTGTACGTGAAGGTGAAGATGGAGGGTGTGGGAATTGCGCGGAAGGTAGATCTTGGCATGCACCAATCCTTTGAGATGCTGATGGAAACCTTGATGGACATGTTTGGAACAGGTCATCGAGAATCAAACAGCTATGAATTGGCTTATCAGGATAAGGAAGGTGACTGGCTTCTGGCACAAGATGTACCTTGGAGGAGTTTCGTTGGATGTGCACAAAGACTGAAATTGATGAAGAGTAACAGATAA 660 0.4409 MELQLGLALSTNQSQSLDLNSHAYDSIFHVHQNNSNKKRTFFQLFDLAPQTLHTDLVLPTLSLLPLTPSHHQDDHDQHSQCSSITKKDEEDAENIVGWPPVNYWRKKLRVDHDEVAGKNDHVVWVDRCHSHGSNSSKSLYVKVKMEGVGIARKVDLGMHQSFEMLMETLMDMFGTGHRESNSYELAYQDKEGDWLLAQDVPWRSFVGCAQRLKLMKSNR* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2277 219 Gene3D - 133 219 - -
Vra7g2277 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 217 IPR003311 GO:0005634|GO:0006355
Vra7g2277 219 SUPERFAMILY CAD & PB1 domains 130 216 - -
Vra7g2277 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 217 - -
Vra7g2277 219 MobiDBLite consensus disorder prediction 69 91 - -
Vra7g2277 219 Pfam AUX/IAA family 2 174 IPR033389 -
Vra7g2277 219 Pfam AUX/IAA family 180 217 IPR033389 -
Vra7g2277 219 ProSiteProfiles PB1 domain profile. 138 219 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2277 Vra-Chr7 42783512 42784817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2277 113 217 B3 DNA Binding Superfamily AT1G19220 31.193 4.30e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra7g2277 AUX_IAA 2.2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2277 K14484 - gmx:100808466 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2277 7 42783512 42784817 Vra7g2277 7 42783512 42784817 ECH