Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2254 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCCGAAATTCGCCACCCACTTCTTAAGAGAAGGGTGTGGCTGGGGACGTTTGAAACGGCAGAAGAAGCTGCCAGAGCCTATGATCAAGCTGCTATTCTTATGAGTGGGAGAAATGCTAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTACCAGTGAGGACACCCCCTCCTCCACCTCCAAGGATCTGGAAGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTACCTTCACCTTCTATGACCTGCTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGAGACGTTCGGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTACGGACAATGAGACTCGTCAAGCTGATAGTAGCACTTCTCTTTCTCTACCTTCTTCCGATAACCACCACCACCACCACCGTGAGTCTCCATCGGGTGTGACAGGTCATCAGCATCATGAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATCGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAGCAACATTCAAGAAAGGGATGGTGGCGATGATGACACCTTTTTTCTTTAA 699 0.4807 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTDNETRQADSSTSLSLPSSDNHHHHHRESPSGVTGHQHHEEVVRGEIDEEERIALQMIEELLNDRNCPSPSFSNIQERDGGDDDTFFL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2254 232 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 MobiDBLite consensus disorder prediction 141 192 - -
Vra7g2254 232 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vra7g2254 232 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 218 - -
Vra7g2254 232 MobiDBLite consensus disorder prediction 208 232 - -
Vra7g2254 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 218 - -
Vra7g2254 232 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 MobiDBLite consensus disorder prediction 61 86 - -
Vra7g2254 232 MobiDBLite consensus disorder prediction 163 192 - -
Vra7g2254 232 MobiDBLite consensus disorder prediction 61 82 - -
Vra7g2254 232 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Vra7g2254 232 MobiDBLite consensus disorder prediction 141 162 - -
Vra7g2254 232 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2254 Vra-Chr7 42494403 42495656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2254 1 207 AP2-EREBP Transcription Factor Family AT1G15360 61.502 2.22e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g2254 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2254 - - gmx:100787517 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2254 7 42494403 42495656 Vra5g1202 5 18424088 18425192 ECH
Vra7g2254 7 42494403 42495656 Vra6g1566 6 30959838 30960782 ECH
Vra7g2254 7 42494403 42495656 Vra7g2254 7 42494403 42495656 ECH
Vra7g2254 7 42494403 42495656 Vra3g1168 3 12365819 12366635 PCT