Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2242 ATGTCTTTCTCTTCTGCACTTCACCCGTCGTTTTCAGACCCACTCTGCTATATAAGCACCCATTCAAACCCTTCCATTATTATTCTTACTACTACTCTCTACTCTCTACTGCTACTACCAAACCAAAACTCCTCCTCTTCTTCCTCCCTTTCATTCTTTAAACAACCCTTTACCATGCCCTGGTCTTATGCTTCCCCCTATGTGCCTCCGCATCACAACTCTAACTACATTCCACCTTCTGATGATCCTGCACACAACGGATTTTCCCGTGCTGCCGCTCCCCGTCCTGGACCCTGGCAACGCGGCGCCAGCGCCGGCCGTGGATTCTCTCGCCCCCGTGACCCTTCTCACCGGAACTCACGCTTCCCCGTGGAGGAACAAGAAAATGGCGACGCTATTAACTTTGACGCGTACGAGTCTGTCCCGGTGGAGGCGAGTGGGAAGGACGTGCCCCCGCCGGTGAACGTCTTCGACGATACGGACTTGGACGAAGGGTTGAAGAGGAATATCAAGCGATGCAAGTACGTGAAACCCACGCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGTGACCTCATGGCGTGTGCACAGACCGGGTCGGGGAAAACGGCGGCGTTTTGCTTTCCCATCATATCTGGGATTTTGAAGGGTCGCTCCTCTTCTGGGTTTGCGCCTGTATCTCGTGGTGTCGCTGTTGCGTACCCCACTGCGCTTATTTTGTCTCCTACGAGGGAGTTATCTTGCCAGATACGCGATGAAGCGAACAAATTTGCATTTCAAACTGGAGTTAAGGTTGTTGTTGCCTATGGTGGGTCTCCTATCATTCAGCAGCTGCGCCTTCTGGAGAAGGGGGTTGACATATTAGTTGCCACTCCTGGGCGCTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGGCGAGGATTAAGTACCTTGCATTAGACGAAGCTGATCGTATGCTGGATATGGGTTTCGAGCATCAAATACGCAAGATTGTGGAGAAAATGCACATGCCACCGCCAGGTATCAGACAGACATTGTTGTTTAGTGCAACGTTCCCTAATGATATACAGAAGCTAGCTTCGGACTTTTTGTCGGACTACATATTCCTGTCTGTTGGGAGAGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATACAGACAAAAGAGACAAACTTGTTGCTCATCTTCGTAGCCAAAAGGTGCATGGGACCAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTAGAAAGCTGGTTATCGAAAAGTGGCTTTCCAGCTATTGCCATACACGGAGACAAAGTTCAATTGGAAAGGGAACGGGCTTTAAGGTCTTTTAAATCTGGACATACTCCTATTTTGGTTGCAACCGATGTTGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCTAGAGACATAGATGACTATGTACACAGAATTGGACGAACAGGCCGTGCAGGTAAATCTGGTTTAGCCACTGCTTTCTTCAGCGACAAGAACAGTCCAATGGCAAAGGCTCTTGTTGGATTGTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCAGAGTGTTCCTCCTCAGGTGGGCGTGGTCGTGGTTATGGATCACAGCGTTACAGCAGTGGTAGCTATGGTGGTCGTGATTTTCGAAATCCCACTGAACCTGAGGTGCAAAGCTACAACTGCTACGGTTCTCATGGCAATGCAGATAATGGTGTAGAATCTTTTAGTACAACCTCATACGTTGATACCTCGTACGACATGCAAAACTACCCTGTAGAAACCTCTTTTGAGAATTTGAATATAAGTTGCAGTTACGATGAAGGTGATGGTAACTCTGTTGAACCGTGTGGAGGTGTAACGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGATGGGACTAG 2010 0.4856 MSFSSALHPSFSDPLCYISTHSNPSIIILTTTLYSLLLLPNQNSSSSSSLSFFKQPFTMPWSYASPYVPPHHNSNYIPPSDDPAHNGFSRAAAPRPGPWQRGASAGRGFSRPRDPSHRNSRFPVEEQENGDAINFDAYESVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKRCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPIISGILKGRSSSGFAPVSRGVAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVAYGGSPIIQQLRLLEKGVDILVATPGRLVDIIERERVSLARIKYLALDEADRMLDMGFEHQIRKIVEKMHMPPPGIRQTLLFSATFPNDIQKLASDFLSDYIFLSVGRVGSSTELIVQKIELVQDTDKRDKLVAHLRSQKVHGTNGKHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQLERERALRSFKSGHTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPMAKALVGLLQEANQEVPSWLNQFAECSSSGGRGRGYGSQRYSSGSYGGRDFRNPTEPEVQSYNCYGSHGNADNGVESFSTTSYVDTSYDMQNYPVETSFENLNISCSYDEGDGNSVEPCGGVTVGEEGPSGYASIVPTGWD* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2242 669 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 111 593 - -
Vra7g2242 669 CDD SF2_C_DEAD 386 522 - -
Vra7g2242 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 374 IPR014001 -
Vra7g2242 669 CDD DEADc_DDX3_DDX4 157 380 IPR044763 GO:0003724|GO:0005524
Vra7g2242 669 Gene3D - 377 555 IPR027417 -
Vra7g2242 669 Pfam DEAD/DEAH box helicase 179 363 IPR011545 GO:0003676|GO:0005524
Vra7g2242 669 MobiDBLite consensus disorder prediction 74 129 - -
Vra7g2242 669 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 111 593 - -
Vra7g2242 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 531 IPR027417 -
Vra7g2242 669 Gene3D - 112 376 IPR027417 -
Vra7g2242 669 MobiDBLite consensus disorder prediction 111 125 - -
Vra7g2242 669 Pfam Helicase conserved C-terminal domain 416 513 IPR001650 -
Vra7g2242 669 SMART ultradead3 174 389 IPR014001 -
Vra7g2242 669 SMART helicmild6 432 513 IPR001650 -
Vra7g2242 669 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Vra7g2242 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 552 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2242 Vra-Chr7 42395327 42398625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2242 157 529 Eukaryotic Initiation Factors Gene Family AT3G13920 34.667 2.61e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2242 K11594 - gmx:100791226 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2242 7 42395327 42398625 Vra7g2242 7 42395327 42398625 ECH