Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2236 ATGGACGAAGATTCGCTCAAACGCAACACTGATTGCGTTTATTTTTTGGCCTCTCCCCTCACTTGCAAAAAGGGGGCTGAATGTGAGTATCGGCACAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCCAATGCCTGAATCCAACGTGTGCTTTTAGACACCCGCCTCTGGATGGGCACACTGGAGTGCCAGCCCCATCTGAACCTGCACAGATTTCATTGCCTGCAAACAAGACAATGGTTCCGTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTTCTTTTTGCATGGGTCTGATGATAGCATTTTTACTGTAAAACCTGTGAAGAATGATAACGGAAGCACCGATGCACGCAATCTAGAAAATAAAACATCATCAGGAAATGGAACTGCTGTAGCGTCAGTACCAACTCACCAATCTTTAACTGCTCCAAAGCATTTGTCTGATTTTAAGCGTCAGCCCAAGGAACAGTTACCGTTATCCAAAAATGTTAAGCAGCAAGGCGATTCCCTAGTGATATCTGCTTCTGAATACAAAGAAGCTGCAGTGAGTAGGTCAGACTCTCCGTTTCCAGATGATGGCTTTGTACATAATGTATCTCATTTACGCACTGAGCGGAGTTCGGAGGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGAGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACAATGAATTGGAGAACTTGGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGAATGAGCAAGAGCTGAATGAACAGTACTTGGGGTATGAATTTAAGGATCCAGTTGAGTATGATACTATGTGCCCGGAAGCTGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGTGACCTTGCTCACGGTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGGAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCCTATGACAATAATTTAGATCTGCGTGACCATCTGAGGAGACGTAGAGAAAATAACGAGCCTCCCATTGCAGGTTTCTTAAGAAGACAAGAATCGTCTTCTTTGATGATTCGAAACCAGGAAAGGCACCAGAGGCCTGGCATTGACCAGCGGCCAAGTAGAAGATTGACATCACAACTAGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACAGGTTATTCAGGCGTTCCCAGCAACACAAACCAAGGAAGCATTATAGAGAAAAGCCAGCGAAACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGATTTGTTGAGGAATCTACTGCATTTTCAGGACCTAAGACTCTTGCAGAAATTAGAGAAGAGAAGAAGAAGGCTGAAGAAGGTTTACATTGGAAACGCCCATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTGAAGGACAAAAGGACTATGGATTAG 1560 0.4301 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPAPSEPAQISLPANKTMVPCYFFFNGFCNKGDKCFFLHGSDDSIFTVKPVKNDNGSTDARNLENKTSSGNGTAVASVPTHQSLTAPKHLSDFKRQPKEQLPLSKNVKQQGDSLVISASEYKEAAVSRSDSPFPDDGFVHNVSHLRTERSSEEQVNSQIEPEERWESSPHSPGFDVLVHNELENLGYEEDSEYLPVLDRNEQELNEQYLGYEFKDPVEYDTMCPEADILYPQETYDGYRCFDSDLAHGNGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDNNLDLRDHLRRRRENNEPPIAGFLRRQESSSLMIRNQERHQRPGIDQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRRSQQHKPRKHYREKPAKRPFLSSKISRKPVFKQRGFVEESTAFSGPKTLAEIREEKKKAEEGLHWKRPSTDFQDPKPLSEILKDKRTMD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2236 519 Pfam RNA-binding, Nab2-type zinc finger 88 108 - -
Vra7g2236 519 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Vra7g2236 519 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vra7g2236 519 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vra7g2236 519 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vra7g2236 519 MobiDBLite consensus disorder prediction 429 450 - -
Vra7g2236 519 MobiDBLite consensus disorder prediction 429 445 - -
Vra7g2236 519 MobiDBLite consensus disorder prediction 484 519 - -
Vra7g2236 519 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 518 - -
Vra7g2236 519 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Vra7g2236 519 MobiDBLite consensus disorder prediction 214 237 - -
Vra7g2236 519 Pfam Zinc-finger containing family 7 63 IPR041686 -
Vra7g2236 519 Gene3D - 2 63 - -
Vra7g2236 519 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vra7g2236 519 Gene3D - 71 121 - -
Vra7g2236 519 MobiDBLite consensus disorder prediction 214 239 - -
Vra7g2236 519 MobiDBLite consensus disorder prediction 120 157 - -
Vra7g2236 519 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vra7g2236 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 518 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g2236 zf-CCCH_3 1.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2236 - - aprc:113847503 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2236 7 42354906 42357832 Vra7g2236 7 42354906 42357832 ECH