Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2231 ATGAGTTTCTCTGACCACATTCCATCTTTTATGATGTCACCGCCGTCATTTTCGACAGACACAGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGATTCATTGGAGCAACATTCACAGCAGGATCAACCCCCTTCGATCAAGAGGGCAAGAATTGGTGATAACAACAACTCCTATCCAATGGCATGCCCTCCAAGGATGATTCAGAACCCCAATTTTAATAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAATTCAGAGTTGGGGCTTGTAGGAACGGTGAGAATTGCAACTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCCCCGAACTGGCAAGAGCTTGTTGGATTACGCAATGAGGAGCGGCTACCCTCCGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTATATTGGGGATGAATGCCCCTATGGTGATAAATGTAGTTTTCTTCATGAAGACCCTGCTAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAACATCGGAACTAATGGATCTCCAAAGGCATATGGTGATCCTTCAAATTGTTTAGAGAGTAATAAGGTTGTCAACACTGGCTTAAATGTTTCCCGGTCGAATGTTAAGTCCACCTATTGGAAGACTAAACTGTGCATCAAATTTGAGACAACAGGGCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCAGGTGCCGCTCCAGTTTCAAATAAAGCTACCATTCCAACCTTAGCAAGAGCTACACCAGTTCCTTCTAATGATGCTCCTCCAAGCCAGAGAGCAAGTGTACCTCCTGCAAATGAAGAGGAGCAGGGCAAGAAACATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCACTTGGTCACAACTTGCCAGGTAGAGTTGGAATCTGA 1041 0.4534 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNDSLEQHSQQDQPPSIKRARIGDNNNSYPMACPPRMIQNPNFNKGTSHIFFKTRMCAKFRVGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYYIGDECPYGDKCSFLHEDPAKFRDDSGRYRESTAINIGTNGSPKAYGDPSNCLESNKVVNTGLNVSRSNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAAPVSNKATIPTLARATPVPSNDAPPSQRASVPPANEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLGHNLPGRVGI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2231 346 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vra7g2231 346 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Vra7g2231 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Vra7g2231 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Vra7g2231 346 Gene3D - 143 172 - -
Vra7g2231 346 Gene3D - 77 114 - -
Vra7g2231 346 Gene3D - 219 258 - -
Vra7g2231 346 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Vra7g2231 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 335 IPR045877 GO:0003729
Vra7g2231 346 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Vra7g2231 346 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vra7g2231 346 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vra7g2231 346 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Vra7g2231 346 MobiDBLite consensus disorder prediction 284 298 - -
Vra7g2231 346 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vra7g2231 346 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Vra7g2231 346 MobiDBLite consensus disorder prediction 284 313 - -
Vra7g2231 346 Pfam CCCH-type zinc finger 87 108 IPR041367 -
Vra7g2231 346 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2231 Vra-Chr7 42325156 42328032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2231 228 257 C3H Transcription Factor Family AT1G68200 60.000 5.51e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g2231 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2231 - - gmx:100793865 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2231 7 42325156 42328032 Vra7g2231 7 42325156 42328032 ECH